Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01658 ATGGTTCGATGTGATATCAGCTCTGAATACTGGCTCAATGTTATGTGTGCATATCCTGAGAGGCAGTTGTTTGATTGGGGCATGATGCGGTTGCATCGTCCAATGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATAAATTAAGAAAGAAACGTGATGCTGAGAGACTATCAAGATTAGAAGAGCAGGCCAAAAATCATTTAGAGACCAGAAAAAGAAGATTTTTCACAGAAATACTGAATACTGTACGTGAGTTCCAATTGCAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGGCAACGTGCAACACGGGCGGAGAAATTGAGATTCCAAGCCTTAAAAGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAAAATGAAAGATTGACTGTACTTCTTGAAGAAACAAATAAACTACTTGTAAATTTGGGGGCAGCTGTTCAACGTCAAAAGGACTCAAAACAATCAGATGGTATTGAACCCTTGGAAGATTCAGAAGCTGACTTCCCAGAGTCAGATGCTTCAAAAAATGGAATTTCTAAGGAATCACCACTTGAGGAAGATGCAGATTTGATAGATTCTGATCAAAATGGTGAGTCTAGTGATTTACTTGAAGGGCAGCGGCAATACAATTCGGCCATACATTCAATTCAAGAAAAGGTGACGGAGCAACCATCTATACTTCAAGGTGGAGAGTTAAGGCCATACCAGCTAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATACAAACCATTTCATTGGTAGCATATCTTATGGAGCACAAGGGTGTGACTGGTCCTCACTTGATTGTGGCCCCAAAGGCTGTTCTGCCTAATTGGATGAGTGAATTCTCAACATGGGCTCCTAGCGTTATAACTATTCTTTATGATGGACGAATGGATGAGAGGAAAGCAATGAAGGAAGAATTGTCTGGAGATGGGAAATTTAATGTTCTGCTAACACATTATGATCTTATAATGAGAGATAAAGCCTTTCTTAAGAAAATCCACTGGAACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTTGCAAGAACCCTAGACTCTGGCTACCACATCCAACGTAGACTTTTGTTGACTGGTACCCCAATTCAAAACAGTTTGCAGGAATTATGGTCCCTGCTAAATTTTCTCCTTCCAAGCATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTGTCTCTAACAGATGAAGAACAGTTATTGATCATTAGGCGTCTACATCAAGTAATAAGGCCCTTTATATTAAGAAGGAAAAAGGATGAGGTGGAAAAATATCTTCCTGGAAAATCTCAGGTCATACTCAAATGTGACATGTCAGCTTGGCAGAAAGTATATTATCAACAAGTAACAGATGTAGGAAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAGAAGTCTACAGAACTTGACGATGCAACTCAGAAAGTGCTGTAACCATCCCTACCTCTTTGTGGGAGACTATCATATGTACAACCGGAAGGAGGAAATTGTCAGAGCATCAGGGAAGTTTGAACTTCTTGATCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCTTACTGTTTTCACAGATGACTCGTCTCATGGACATTCTTGAAATTTATCTGCGACTTCATGATTTTAAGTTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCTCTATTACGGAAATTTAACGCTCCTGACTCTCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACCTACAATCAGCAGATACTGTTATAATATTTGATAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGACCGAGCCCATCGCATTGGACAAAAAAAGGAAGTCAGAGTATTTGTGTTAGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTTATCCAAGCAGGACTTTTCAATACAACTTCAACAGCTCAGGACAGAAGAGAAATGTTAGAGGAGATTATGCGAAGAGGTACAAGCTCACTTGGGACCGATGTACCGAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCCGATGAGGAATTTTGGCTGTTTCAGAAAATGGATGAAGAGAGGAGACAAAGGGAGAATTATAGATCTCGTCTCATGGAAGAGCATGAAGTTCCAGATTGGGTATACTCTGCTCTAAATAAGGATGATCAGGCCAAAGCTTTTGATGTTGGTAGTGTTACCGGAAAGCGGAAAAGAAAAGAAGTCGTGTATGCAGACACATTAAGTGATCTGCAGTGGATGAGGGCTATGGAGAATGGACAAGATGTATCTAAGCTTTCAGCTAAAGGGAAGAAAAGAGGCATCCTCCTTTCTGACAACCATGCACAAGCCAGCAATAAAACAGTGGCCGATGAAAGGTTGTTAGAGCAAAGGAGTGGAAGTGTCCTCAAGATGAAGATTGAAAGATCAAGTGCAGATGATTTCATTGTGACTCCTGCTTCTAAGCGGCTGAAAACTGAAGAACCAAGTTCTCAGAAACATGGAAGTGAGAGTGGTGTGGACGAGAATACGTTTTCCTGGAATATTCACAGGAAGAAGAGAACAAGCTATCCCGGCCAGGGTTCATCATCTGATACCAGAGACCAGAATGCCAATGACAGAGCAAATAGGAACTGA 2865 0.414 MVRCDISSEYWLNVMCAYPERQLFDWGMMRLHRPMYGVGDPFAMDADDKLRKKRDAERLSRLEEQAKNHLETRKRRFFTEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTVLLEETNKLLVNLGAAVQRQKDSKQSDGIEPLEDSEADFPESDASKNGISKESPLEEDADLIDSDQNGESSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLVAYLMEHKGVTGPHLIVAPKAVLPNWMSEFSTWAPSVITILYDGRMDERKAMKEELSGDGKFNVLLTHYDLIMRDKAFLKKIHWNYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSRSLQNLTMQLRKCCNHPYLFVGDYHMYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQSADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFQKMDEERRQRENYRSRLMEEHEVPDWVYSALNKDDQAKAFDVGSVTGKRKRKEVVYADTLSDLQWMRAMENGQDVSKLSAKGKKRGILLSDNHAQASNKTVADERLLEQRSGSVLKMKIERSSADDFIVTPASKRLKTEEPSSQKHGSESGVDENTFSWNIHRKKRTSYPGQGSSSDTRDQNANDRANRN 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01658 954 MobiDBLite consensus disorder prediction 895 954 - -
Arst5g01658 954 Gene3D - 220 476 IPR038718 -
Arst5g01658 954 SMART ultradead3 248 441 IPR014001 -
Arst5g01658 954 MobiDBLite consensus disorder prediction 169 224 - -
Arst5g01658 954 MobiDBLite consensus disorder prediction 912 945 - -
Arst5g01658 954 Pfam Snf2-ATP coupling, chromatin remodelling complex 769 830 IPR029295 GO:0042393
Arst5g01658 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 477 IPR027417 -
Arst5g01658 954 Pfam Helicase conserved C-terminal domain 563 676 IPR001650 -
Arst5g01658 954 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 264 430 IPR014001 -
Arst5g01658 954 Coils Coil 52 72 - -
Arst5g01658 954 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 566 733 IPR001650 -
Arst5g01658 954 PANTHER SNF2/RAD54 HELICASE FAMILY 47 864 - -
Arst5g01658 954 FunFam Probable ATP-dependent DNA helicase CHR12 483 782 - -
Arst5g01658 954 Pfam SNF2-related domain 255 543 IPR000330 GO:0005524|GO:0140658
Arst5g01658 954 SMART SnAC_2 769 830 IPR029295 GO:0042393
Arst5g01658 954 CDD SF2_C_SNF 554 687 - -
Arst5g01658 954 SMART helicmild6 592 676 IPR001650 -
Arst5g01658 954 Coils Coil 767 787 - -
Arst5g01658 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 730 IPR027417 -
Arst5g01658 954 FunFam Chromatin structure-remodeling complex protein SYD 243 486 - -
Arst5g01658 954 Gene3D - 483 782 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01658 Arst-Chr5 19207352 19212506 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01658 559 694 RAD5 or RAD16-like Gene Family AT5G43530 39.130 1.14e-21 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst5g01658 SNF2_N 9.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01658 - - gmx:100775993 1640.94