Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01640 ATGCTGTCCAATCATTTTCAAAACGGCGTCGAAACGGTGAGGCACGCTTGGTCGCGGATCCCAAACTCCGAAGAATCACAGTTCGTCGACGACGCCGTTGGGCTTGTGAGGAAAAGCGATGGAAGCAGCGTTGAGAGCCTTGACTATGAAGTCATAGAAAATTTTGCTTATCGAGAAGAACAGGCGCGCAGAGGGAAGCTGTACGTGAGTTATTTGCTGGTGGTGAAATGGCTTTTCGCCTTGCTCATTGGCATTGGCACTGGTCTTGCTGCTGTTTTCATCAACTTGTCTGTTGAAAATTTTGCTGGCTGGAAATTCTCATTGACATTTAGTATAATTCAGAAGTCATACATTGCTGGCTTTCTCCTATATGCCCTGATAAACTTGGTTTTGGTGTTTTCCTCTGTATATATTGTCACACAGTTTGCACCAGCTGCTGCTGGATCTGGTATTCCCGAAATCAAGGGTTACTTAAATGGGGTTGATATTCATGGGATTCTTCTTCTGAGAACTTTGATTGGGAAGATATTTGGCAGCATTGGATCAGTGGGAGGAGGCCTTGCTTTAGGTAAAGAGGGTCCTCTTGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGTTCCACCAAGTATCATATAAATTCAAGATGGTTTCAAGTATTCAGAAGTGATCGAGATCGACGAGATCTGGTAACCTGTGGATGTGCAGCAGGAGTTGCTGCTGCATTTAGAGCTCCTGTTGGTGGTGTATTGTTTGCATTGGAAGAGGTAACATCTTGGTGGAGGAGTCAACTTATGTGGCGTGTCTTCTTCACTTCTGCTATTGTTGCTGTTGTAGTGCGAACTGCAATGGGATGGTGTAAGAATGGAAATTGCGGACATTTTGGGTCTGGCGGATTCATAATATGGGATATATCAGATGGTCAAGAGGATTATTCCTTTGCAGAGCTATTGCCAATGGCTATTATTGGGGTTATTGGAGGCCTACTAGGAGCTTTATTTAACCAGCTTACACTTTATATTTCTAGTTGGCGTCGAAACCACCTTCACAAAAAAGGGAGCCGAGTCAAGATTATTGAAGCATGCCTTGTCTCCCTTTTAACGTCAATTATTTCATTTTGCTTGCCACTTCTAAGAGAATGTAGTCCATGCCCGGAATCTGATCCTACTTCTGGTATTGAATGCCCACGTCCTCCTGGAATGTATGGGAATTATGTAAATTTCTTTTGTAGCAGTGACAAGGAGTATAATGATCTTGCGACTATTTTCTTCAATACACAGGATGATGCCATCAGGAATTTGTTCAGTGCGAAAACAATACATGAGTACAGTTCCCAAAGTCTGTTAACCTTTTTGGTTATGTTTTATACTTTAGCAGTGTTGACGTTTGGTACTGCTGTGCCAGCCGGTCAATTTGTCCCTGGTATAATGATAGGATCAACTTATGGACGTCTTGTTGGCATGTTTGTTGTAAAATATTACAAAAAGCTCAACATTGAAGAGGGAACGTATGCTTTGCTGGGAGCTGCATCTTTTCTTGGTGGTTCAATGCGGATGACAGTGTCTCTTTGTGTCATTATGGTTGAAATAACAAATAACCTGAAACTTTTGCCCCTTATTATGCTTGTTCTTCTTATATCGAAGGCTGTGGGTGATGCTTTTAATGAGGGTCTATATGAAGAGCAGGCAAGATTAAGGGGCATTCCATTACTGGAATCAAGGCCTAAATATGAGATGCGGAACATGACAGCAAAGGAGGCCTGTGGAAGTGGAAGGGTGATCTCGTTACCTCGGGTAGTTAAGGTTTCAGACGTAGTTTCCATTCTACGGAGCAACAAACACAATGGTTTTCCGGTGATTGATCACACAAGAAGTGGAGAATCACTTGTTATTGGATTAGTACTTCGGAGTCATTTGTTGGTAATCCTTCAGTCAAAGGTTGATTTCCAGCATAGCCCTTTACCCTCTGATCCCAGAGGTGGGGACAGGTCAATAAGGCATGATTCTCATGAATTTGCTAAGCCTGTTTCTAGTAAGGGGATATGTATCGACGATATACATCTAAGTCCAGATGACTTGGAAATGTACATAGATCTTGCTCCATTTTTGAATCCCTCACCATACATTGTCCCTGAAGACATGTCTTTGACAAAGGTGTACAATCTTTTCCGCCAACTTGGTTTGAGACATTTGTTTGTTGTTCCTCGACCATCTCGTGTGCTTGGTTTAATAACCAGAAAAGATTTGATGATTGAGGACACGGAAAATGTGAATACATTAGAGCTTCAGTCAACTAGTGTAAGAAATCGGCATCATAATAAAAGACCGACGACAAGGAATTCAGATGTGGAGCGCCCTTTGCTCAATGGTCTTCTTGTTGGTTCAGAATAA 2400 0.4233 MLSNHFQNGVETVRHAWSRIPNSEESQFVDDAVGLVRKSDGSSVESLDYEVIENFAYREEQARRGKLYVSYLLVVKWLFALLIGIGTGLAAVFINLSVENFAGWKFSLTFSIIQKSYIAGFLLYALINLVLVFSSVYIVTQFAPAAAGSGIPEIKGYLNGVDIHGILLLRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHINSRWFQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKNGNCGHFGSGGFIIWDISDGQEDYSFAELLPMAIIGVIGGLLGALFNQLTLYISSWRRNHLHKKGSRVKIIEACLVSLLTSIISFCLPLLRECSPCPESDPTSGIECPRPPGMYGNYVNFFCSSDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSSQSLLTFLVMFYTLAVLTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQARLRGIPLLESRPKYEMRNMTAKEACGSGRVISLPRVVKVSDVVSILRSNKHNGFPVIDHTRSGESLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGDRSIRHDSHEFAKPVSSKGICIDDIHLSPDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLMIEDTENVNTLELQSTSVRNRHHNKRPTTRNSDVERPLLNGLLVGSE 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01640 799 CDD ClC_6_like 45 574 - -
Arst5g01640 799 ProSiteProfiles CBS domain profile. 585 652 IPR000644 -
Arst5g01640 799 FunFam Chloride channel ClC3 68 385 - -
Arst5g01640 799 SUPERFAMILY CBS-domain pair 579 753 IPR046342 -
Arst5g01640 799 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 18 759 - -
Arst5g01640 799 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 18 759 - -
Arst5g01640 799 Gene3D - 594 760 IPR046342 -
Arst5g01640 799 FunFam Chloride channel protein 698 789 - -
Arst5g01640 799 Pfam Voltage gated chloride channel 132 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Arst5g01640 799 MobiDBLite consensus disorder prediction 766 789 - -
Arst5g01640 799 Gene3D Clc chloride channel 69 575 - -
Arst5g01640 799 PRINTS Chloride channel signature 523 542 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Arst5g01640 799 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Arst5g01640 799 PRINTS Chloride channel signature 470 490 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Arst5g01640 799 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Arst5g01640 799 PRINTS Chloride channel signature 505 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Arst5g01640 799 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Arst5g01640 799 PRINTS Chloride channel signature 561 575 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Arst5g01640 799 ProSiteProfiles CBS domain profile. 706 763 IPR000644 -
Arst5g01640 799 Pfam CBS domain 598 646 IPR000644 -
Arst5g01640 799 Pfam CBS domain 707 753 IPR000644 -
Arst5g01640 799 SMART cbs_1 709 757 IPR000644 -
Arst5g01640 799 SMART cbs_1 595 647 IPR000644 -
Arst5g01640 799 SUPERFAMILY Clc chloride channel 54 576 IPR014743 -
Arst5g01640 799 CDD CBS_pair_voltage-gated_CLC_euk_bac 596 753 - -
Arst5g01640 799 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Arst5g01640 799 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Arst5g01640 799 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Arst5g01640 799 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Arst5g01640 799 PRINTS Plant CLC chloride channel signature 422 438 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01640 Arst-Chr5 18683412 18691033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01640 1 772 Ion Channels AT5G26240 83.700 0.0 1256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01640 K05016 - gmx:100811908 1436.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01640 5 18683412 18691033 Arst5g01640 5 18683412 18691033 ECH