Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01597 ATGTCTCAAACCTTTGATTACCTGGCTGATTTAAATGCAAGAAAACTGCAATGGAATTTCAAAGTATATGTAATACGTGTGTGGGAACTCCCTAACAGATACAATGAAGGAGAAGTTGGCACCATTGAAGTGATTATTGAAGATAGTCAGGGCACAAGGTTGCAAGTCTCGATCCCTAAATCCCTGGTGAGCAAGTGGCGGGGTGTCTTGGTTCAGTTTCAAATGTACATTATGACCAACTTCATTGTTGTTGACAACCAAAAGGGTAACATATCAAGGGGAAAGTATTTATTATTCTTCAGTCATAGGACAATCGTCAGTCATGTTGAGAATCCCAGTTTTTCGCTAAATGCTTTTCGATTTAGAACCATCCGTGAGTTACTAAATGCTGAGAAGATCGATGACTCTGCATTGTTTGACATGATTGGTGAAGTAGTTGGTAAAGAAGATCCAAAAGAGTTGATCACCAGCAAAGGAAAGGAGACTAAACGACTGGCTGTTATCTTGGAGGACCTAGAAAACAATAGGATTGGGTGCACTATATTTGGTGAAATGGTTGACCAGCTACTTCGTCACATGCAAGATGGAAGGGTTGAGCCACTAATAGTTGTGGTCCAGTATTTTAAGGCAACCAGATGGAATGGCAAGACATCTGTCCAAAGCCATTTTGACATTTCACAGCTGCACATAGACTCCAACCTTAAAGATGTTGCTGAATTTAGGAGCAGGCTGCTTGGCGGTGAACCATCATCCTCTGTGAGGATTAGTCAAGTTCCATCAAAAACAGCTTGGTCAGGGGTTGAGGAGCTTAAACAAGGTGCTGTGTCAGTGAAAACAATTGAAGAAGTCCTTATCCAACATGAGGAAGGTCCAGCTTGGATTGCTGCAAGTATTGTTGCGATTAATGTTACGAAGGATGATTGGTTCTATAAATCATGTAGAAAATGTCCAAAGAAAGTAGAAACTCCTATTGGAAACAGATATGAATGTGGGAAGTGTGGCCATACACATGGATCTGCAGCCCTAAGGTTCAAAGTCGAGGTGATGGTTTTTGATGGAACCGGTAGCATCCGATTGCTACTATGGGACAAGGAAACAAGTATGCTATGTGGGAAGAGAGCTGAACAGATTATGGAGGACGATGTTATAGTGGGAGATGAATATCCCAAAACACTTGATAACATGATGGAAAAAAGAGTCCTTTTCAAGATAAATATCAAAGAAGCCAACATTAATCAATTTGATCATGTGTACACGGTTATGAAAATCTGTGATGATGAGGATATCATTGACAAAAATCTTCCCAAAGAGTTGTCTACTAATCTTCCGAGTAATGTCAGTGAAGATGGCTGCAACAACTATTTGGAAATTTCAGAAAATGTGGCTAATCTTAAAACTGATTGTGATACTGAGTCTTCTATGGATGTTGTGGAGGAGTGCATCTCATCCCTCAAGTACAAAACACCATCCAAAAATATTACCAATGGATTGAAGAATTCTCCTCTAAGTCTGAATGAAGATGAGGAAGAAGGCCAGCTATCAACCAACAGGTTCAGTAGGAAGATGGGAAAGAGACAGAAATGTGTTAACCTTGATGCAGATATATGA 1608 0.4011 MSQTFDYLADLNARKLQWNFKVYVIRVWELPNRYNEGEVGTIEVIIEDSQGTRLQVSIPKSLVSKWRGVLVQFQMYIMTNFIVVDNQKGNISRGKYLLFFSHRTIVSHVENPSFSLNAFRFRTIRELLNAEKIDDSALFDMIGEVVGKEDPKELITSKGKETKRLAVILEDLENNRIGCTIFGEMVDQLLRHMQDGRVEPLIVVVQYFKATRWNGKTSVQSHFDISQLHIDSNLKDVAEFRSRLLGGEPSSSVRISQVPSKTAWSGVEELKQGAVSVKTIEEVLIQHEEGPAWIAASIVAINVTKDDWFYKSCRKCPKKVETPIGNRYECGKCGHTHGSAALRFKVEVMVFDGTGSIRLLLWDKETSMLCGKRAEQIMEDDVIVGDEYPKTLDNMMEKRVLFKINIKEANINQFDHVYTVMKICDDEDIIDKNLPKELSTNLPSNVSEDGCNNYLEISENVANLKTDCDTESSMDVVEECISSLKYKTPSKNITNGLKNSPLSLNEDEEEGQLSTNRFSRKMGKRQKCVNLDADI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01597 535 SUPERFAMILY Nucleic acid-binding proteins 277 425 IPR012340 -
Arst5g01597 535 Gene3D - 114 250 IPR012340 -
Arst5g01597 535 PANTHER OS03G0429900 PROTEIN 7 486 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Arst5g01597 535 CDD RPA1_DBD_B_like 140 244 - -
Arst5g01597 535 MobiDBLite consensus disorder prediction 495 509 - -
Arst5g01597 535 CDD RPA1_DBD_C 277 423 IPR047192 -
Arst5g01597 535 Gene3D - 4 108 IPR012340 -
Arst5g01597 535 SUPERFAMILY Nucleic acid-binding proteins 120 244 IPR012340 -
Arst5g01597 535 Pfam Replication factor-A C terminal domain 300 423 IPR013955 -
Arst5g01597 535 SUPERFAMILY Nucleic acid-binding proteins 5 114 IPR012340 -
Arst5g01597 535 Gene3D - 262 433 IPR012340 -
Arst5g01597 535 MobiDBLite consensus disorder prediction 495 515 - -
Arst5g01597 535 Pfam Domain of unknown function DUF223 43 112 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01597 Arst-Chr5 18144585 18147063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01597 8 362 Core DNA Replication Machinery Family AT2G06510 23.797 7.85e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01597 - - ahf:112803244 956.051