Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01427 ATGGCTAACTTGCTAATAACTTTGTTCTTAATTTCCATTTTTGAATTCTTGTTTCTTGCTAACGCAACAAGAAGCAAAACCACTTCACCAGCTTGTGGAAGCAGATATTGTGGAAGCTCTGAAGTAGCTATTGAGTTCCCTTTCCATTTGACACAGGATCATACTAGCTTTGTTGAAGGAGATGCACGATGCGGGTACCAAGGTTTTGAAGTTTCGTGTAACCAAAGGAATTTGATGATTAGTCTCCCAAATGGAGGAGGAGAATTCATCGTCAAAAACATCTCTCTAGAGCACCAATATATTTGGGTAAACGACCCTAATGAGTGTTTTGCTAAACGGTTCTTGCAGGGCAAGGATCTCATCAAAGATTCACCCTTCCTATGGGGCCTTCCAAATTCAAAGAGAGTGATGTTTTACAATTGCAGCGAATTAGCAGGAATTGATGTTGATCCACAACTACGTCTTCCTTGCCTGAGTGACGATGAGAAGCATTATTATTCTGTTATAGTTTTGTCAGAGTCAGATATTGAGAATGAGAATTATTATAGTTCAAGGTGTAGGAATATTGGGTCTGCTTTGTTTCCCGTTAAGGATGTTTCAGAAGATGATTCTTCAATATCATCACGGCAAATAAGAGATGAACTTGTTCATTTTGATATGAAGTTGCAATGGTTTAGGCCTAGTTGTTATTGTAAGGAGGATCAACACTGTGGCTTCATACCAAATACTGATTTTGACGTTGTTTGTTACAACCACAAAAATCAAGAACAAGATATGTTACTTGAACTTGACAGCGGTTATTCCAATAATAATGGTAATGGGCACATGCAAGCACTTTCCGGTACTAGTGGAAGTCCTCCAAGTTATTATTATGGTGAAAAGGAAGAGAGCAAGTTTGCTATAGGATTGGGAACGCTAGGTATATTAATATTATTATTTTATGTAGCATTTCATATAACTAAGGAGATGAGAGAAGAAAGGTTACGACAGAGAATCATGGAGACCCAACATGCGCGAGCAAGGAGAATGTTGTTAAGCCAACAGCGACAGCTAGGAGAGCTACGCAGATTAAGAATGATGGAATCATCATCAATAATCAGTGAGAGGTACCCTGCCACCAGCGATGAGAATTCAACAATAATAATAGAGTTAGAACAATGTCCAGTTATCCAGCTAGGTGACAGTGGACAATTGCCAACAATGTTAATGGACAACGTTTGCTCTATATGTCTTAGTGAGTACGAGGCTAAAGAAACATTACGGAGCATGCCACAGTGTAATCACTTTTTTCATTCTCATTGTATTGATGCCTGGCTCAAGATGAATGCTACTTGTCCCTTGTGCCGAAAATTGCCAATATGA 1362 0.3891 MANLLITLFLISIFEFLFLANATRSKTTSPACGSRYCGSSEVAIEFPFHLTQDHTSFVEGDARCGYQGFEVSCNQRNLMISLPNGGGEFIVKNISLEHQYIWVNDPNECFAKRFLQGKDLIKDSPFLWGLPNSKRVMFYNCSELAGIDVDPQLRLPCLSDDEKHYYSVIVLSESDIENENYYSSRCRNIGSALFPVKDVSEDDSSISSRQIRDELVHFDMKLQWFRPSCYCKEDQHCGFIPNTDFDVVCYNHKNQEQDMLLELDSGYSNNNGNGHMQALSGTSGSPPSYYYGEKEESKFAIGLGTLGILILLFYVAFHITKEMREERLRQRIMETQHARARRMLLSQQRQLGELRRLRMMESSSIISERYPATSDENSTIIIELEQCPVIQLGDSGQLPTMLMDNVCSICLSEYEAKETLRSMPQCNHFFHSHCIDAWLKMNATCPLCRKLPI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01427 453 SMART ring_2 407 448 IPR001841 -
Arst5g01427 453 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 450 IPR046948 -
Arst5g01427 453 ProSiteProfiles Zinc finger RING-type profile. 407 449 IPR001841 -
Arst5g01427 453 Pfam Ring finger domain 406 449 IPR001841 -
Arst5g01427 453 SUPERFAMILY RING/U-box 401 450 - -
Arst5g01427 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 452 IPR013083 -
Arst5g01427 453 Pfam Wall-associated receptor kinase galacturonan-binding 32 105 IPR025287 GO:0030247
Arst5g01427 453 CDD RING-H2_EL5-like 407 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01427 Arst-Chr5 15822919 15825018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01427 32 452 C3H Transcription Factor Family AT2G25410 28.235 1.03e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01427 - - ahf:112801412 876.7