Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01375 ATGGGAGCTGGCCATGCCCGAAGTCGTTACCTTAACCGTAAGGAGGGGGATGCCGAAGGCAGGGCTAGTGACTGGAGTGAAGTCGTAACAAGGGTGTTCTATTTGCTCGTAGCTCGCGATTTTCCCGAAGAAGTGCATCTTTTATCCGAACCTTCTTCCATAATGGTAAGGAACAACAGTATTATTGAAACAAATATACCAATCACTTTTAATATAAAAAGTCGAGTAGGCGGATTGGTGCGAATGGAGAAGAAAAAAAAAAAGATTGAATTACAAAAATTTTTTGGGGAAATTCATTTTCCTGGCGAAATGGATAAGGTATACCGACACAGTGGTATTTTGATACAACCCGAAAGGTTAAAAAAAGATTCAAAGGAATCAAAAAAAATTAAAAATTGGATCTCTGTCCAATGGATCACAATTATCAAGAAAAAGTATTTTGTTTTGGTTCGACCTGTAATTCTATATGAAATTACAAACGGTATCAATTTAGTCAAACTTTTTCCACAAGATCTGTTCCGGGAAAGGGATAATTTGGAGCTTAAAGCTCTCAATTATATTCTTTATGGAAATGGGAAATCAATTCGTAAAATTTCTCACACAAGCATTCAATTAGTTCGAACTTGTTTAGTATTGAATTGGGATCGAGATAAAAAAAGTTCTTCGATAGAAGAATCCCGTGCTTCTTTTGTTGAAGTAAATATAAATGGTCTGATTGGAGATTTTCTAAGAATTGATCCAACGAAATCGCGGATTTCCTATATCAGAAAAAGAAATGATCCATCCGGTTCAGAATGGATCTCGGATAATGAGTCAGATCAAATCAATATTAATCCATTTTTTCCTATTTCTTTCCAGAAAAGAATTCAACAATCACATATCCAAAATCATGAAACGATTCATGTGTTGTTGAACAGAAATACAGAATGCCAATCTTTGATAATTTTGTCATCATATGATTGTTTTGAAATAGGACCTTTTAGCAATGTAAAATACTACAACGAGCTGAAAATAAAAAAGAGAATAAAAAAAATAAAAAAGGATCTTCAAATTCCAATTAAGAATTCATTAGGTCCCGTAGGAATAGCACTTCAAGTTTCAAATTTTTATTCAGTTTACCTTTTAATAACTCATAATCAGATCTCGATGAATAAAAATTTGAAACTTGACAAGTTTTTTTTAACTTGGCAAGCATTAAAAATTTTTTTAATGGACGAAACCGAGATAATTTATAAGCCCGATCCATGCAGCAACATAAAATTAAATACATTCCGTTTGAATTGGGATTTTCTCCATCATGATTATGATTCTAAATATTGTGAAAAAACGATTACAATAATTAGCCTGGGACAATTTATTTGTGAAAATGTATGTCTATCTCAAACAAAAAATGGACTAGAACTAAAATTAAAATCGGGACAAGTTTTAATTGTTAAAATGGATTCCATATTAATAAGATCGGCTAATACCTATTTGGCGACTCCAGGAGCAACAGTTCATGGACATTTTGGAGAAATCTTTTTTGAAGGAGATATATTAGTAACATTTATATATGAAAAATCGAGATCAGGTGATATAACCCAAGGTCTTCCAAAAGTGGAACAGGTATTAGAAGTTCGTTCGATTGATTCAATATCGATTAACCTAGGGAAGAGGGTTGACGCTTGGAACGAACATATAACCAAAATTCTTGGCATTCCTTGGGGATTCTTTATTTGTACTGAGCTAACTATTGTCCAAAGTCGAATTTCTTTGGTTAATAAAATCCAAAGGGTTTATCGATCCCAAGGAGTGCATATACATAATAGACATAAAGATTTTGGTTATAGTTTTCCTTGCGATGGTCCGGGACGAGGTGGTACTTGTGATATTTCGGCTTGGGACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACGATTGGCTGGATGTCAAGTATATTTACGGACACTGAGATGAATGAGCAATACCAGGAGGACGATGACTTTAACCAACAAGAAGAGCTATTAGAAGATATCCTTGAAGCTGTTTATGCGGTTGACTCCGTGCAAGACATTACAACTTTTAAATTTAGTAAAAATTTTGCGGAGGAAATTGGCAAATATCACTTTTCTACTTTGCAGCTTGCATTTGATTTTTATCTGAAGTACTCAAAGTCAAAGGACTTTAGTGCAAGGAAGAGCAAGACCTTCAAGAATAGTATTGGCGAGATTTACAAACAAAAGTTTGTATGTCATAGGCAAGGATTCAGGGAGGAGAAATATTACACGATGGAAAAAAGAAAGAAGGAGCCTAGATTGGAAACAAGAACTGGATGTGAAGCTCGAATGGATGTTAAATTTGTACCAAAAACTGGAAGGTGGCATATTTTTTATTTCTTTGACGAACACAACCATGATCTATTGGATACACAATTCAGTGCTTTGTTGCCTGCCCACAGAAAAATGTCAGAGGCAGATATTATGCAAATGATGAACATGCTAAAGTCAGGGATTAGCACTTCACAGATATTTGGTCTTCTAGCTAGTCAAGCAGGCGGGTATGAATTTGTTGGCTATGGTCCCAAATATATGTACAATGAGATTGCTCGGCAAAGGCGTCAAATTTTTGGTGATGCAGCACGAGTGTTGAAGAAGTTGGAGGCTATGCGGTTGAAGGACCACAATTATATTTCAAGGTATGTCATGATTCAAGAGGTTTGTTACGTAACTTGTTCTGGTCTGATGGGATTAGCCAACTAG 2742 0.3505 MGAGHARSRYLNRKEGDAEGRASDWSEVVTRVFYLLVARDFPEEVHLLSEPSSIMVRNNSIIETNIPITFNIKSRVGGLVRMEKKKKKIELQKFFGEIHFPGEMDKVYRHSGILIQPERLKKDSKESKKIKNWISVQWITIIKKKYFVLVRPVILYEITNGINLVKLFPQDLFRERDNLELKALNYILYGNGKSIRKISHTSIQLVRTCLVLNWDRDKKSSSIEESRASFVEVNINGLIGDFLRIDPTKSRISYIRKRNDPSGSEWISDNESDQININPFFPISFQKRIQQSHIQNHETIHVLLNRNTECQSLIILSSYDCFEIGPFSNVKYYNELKIKKRIKKIKKDLQIPIKNSLGPVGIALQVSNFYSVYLLITHNQISMNKNLKLDKFFLTWQALKIFLMDETEIIYKPDPCSNIKLNTFRLNWDFLHHDYDSKYCEKTITIISLGQFICENVCLSQTKNGLELKLKSGQVLIVKMDSILIRSANTYLATPGATVHGHFGEIFFEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLGKRVDAWNEHITKILGIPWGFFICTELTIVQSRISLVNKIQRVYRSQGVHIHNRHKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWMSSIFTDTEMNEQYQEDDDFNQQEELLEDILEAVYAVDSVQDITTFKFSKNFAEEIGKYHFSTLQLAFDFYLKYSKSKDFSARKSKTFKNSIGEIYKQKFVCHRQGFREEKYYTMEKRKKEPRLETRTGCEARMDVKFVPKTGRWHIFYFFDEHNHDLLDTQFSALLPAHRKMSEADIMQMMNMLKSGISTSQIFGLLASQAGGYEFVGYGPKYMYNEIARQRRQIFGDAARVLKKLEAMRLKDHNYISRYVMIQEVCYVTCSGLMGLAN 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01375 913 SUPERFAMILY Photosystem I subunits PsaA/PsaB 568 684 IPR036408 -
Arst5g01375 913 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA 267 438 - -
Arst5g01375 913 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 402 604 - -
Arst5g01375 913 PRINTS Plant photosystem I psaA and psaB protein signature 602 622 IPR001280 GO:0009579|GO:0015979|GO:0016020
Arst5g01375 913 PRINTS Plant photosystem I psaA and psaB protein signature 629 650 IPR001280 GO:0009579|GO:0015979|GO:0016020
Arst5g01375 913 Pfam Photosystem I psaA/psaB protein 585 690 IPR001280 GO:0009579|GO:0015979|GO:0016020
Arst5g01375 913 ProSitePatterns Photosystem I psaA and psaB proteins signature. 613 622 IPR020586 -
Arst5g01375 913 Gene3D Photosystem I PsaA/PsaB 498 694 IPR036408 -
Arst5g01375 913 Pfam FAR1 DNA-binding domain 712 802 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01375 Arst-Chr5 14736284 14742127 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Arst5g01375 PsaA_PsaB 8.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01375 K03046 - adu:127747585 1826.99