Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01346 ATGGGTGGTTGCTGTTGCTGTTCTTCCAAGGACACTGATTCTGCTCAAAATACCTACTATTACTACCCGAGAGTATCAGAGGAGCATGTTCCGTTATCATCCAATCATGGTGCTGCGTCTGTTTTTGCTGGAGGTCCCAATCCAACTCTACCTGTAGCCAGAGAAATTTGTGCTGACAAAACTAATGCATCAGCTGCTGGGGCAAATCATGAGGCCTCGGCTAAGTTGGAAGAGCTGAAGGAATCAGCAGGGCTCAAAGTTCAGACCGACCTAGAACTACGAAAACTGGTAGAACCTATCATTTTAGAGGAAGAGGAGGATGTGTGCCCAATTTGTTTAGAAGAGTATGATGCAGAGAATCCAAAACTCACTACAAAGTGTGATCATTATTTCCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGCGAAACTTGTCCTGTATGTGATCAGGATATGGTTTTGGACCCTCTCATTCACTGA 483 0.4451 MGGCCCCSSKDTDSAQNTYYYYPRVSEEHVPLSSNHGAASVFAGGPNPTLPVAREICADKTNASAAGANHEASAKLEELKESAGLKVQTDLELRKLVEPIILEEEEDVCPICLEEYDAENPKLTTKCDHYFHLACILEWMERSETCPVCDQDMVLDPLIH 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01346 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 155 IPR013083 -
Arst5g01346 160 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 49 155 - -
Arst5g01346 160 SUPERFAMILY RING/U-box 102 155 - -
Arst5g01346 160 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Arst5g01346 160 Pfam Ring finger domain 108 149 IPR001841 -
Arst5g01346 160 SMART ring_2 109 149 IPR001841 -
Arst5g01346 160 CDD RING-H2_AIRP1-like 105 153 - -
Arst5g01346 160 FunFam Putative E3 ubiquitin-protein ligase RHB1A 86 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01346 Arst-Chr5 14386772 14388950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01346 1 156 C3H Transcription Factor Family AT5G41350 40.670 1.52e-41 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01346 - - adu:107488151 316.235