Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01336 ATGGGGAAGGGTAGACCTAGGGCTGTGGAGAAGGGTGTAGTTGGGGCGAGCAACACTGTTACCTGCTGCGAGTCCACCAGTGTACCCTCAGGTCCTGTGTATTACCCTACTGAGGATGAGTTCAAGGATCCCTTAGATTATATTTACAAGATTAGGCCTGAGGCTGAGCCTTATGGGATTTGTAGGATTGTTCCACCTAAGGGTTGGAACCCTCCTTTTGCTTTGGATCTGGATACTTTCACTTTTCCCACCAAGACACAGGCCATTCACAAGCTCCAGGCTCGCCCCGCCGCATCGGACTCCATGACTTTTGACTTGGAGTACTCTAGGTTCTTGCAGGACCAGTGTGGTAAGAAGTCTAGAAAGAGGGTTGTGTTTGAAGGGGAGGACTTGGACTTATGCAAGTTGTTCAATGCGGTTAAGCGCTTTGGCGGGTACGATAAGGTTGTTGATGCCAAGAAGTGGGGGGATGTTGCTAGGTTTTTGAGGCCGGCTGGGAAGATTACGGATTGTGCTAAGCATGTGTTGTGTCAATTGTACCGGGAGCATTTGTATGATTATGAGGAGTTTTATAATAAGATGAATCAAGGGACTGCTGTGAACTGTAAGAAAGGTGAGAGAGATGAGAGGAAGAGTGATCACAGAGTGCAATCCTCGACGTCCAAGAAGCATCCCCGGAGGGTTAGTGGTCTGAAAGTTAAGGATTGTAAAGTACATGTAGAAGAAGAACGTGATCAGATTTGTGAGCAGTGCAAGAGTGGTTTGCACGGTGAAGTCATGCTTTTGTGTGATAGGTGCGATAAGGGCTGGCATACTTATTGTCTTTCCCCGCCGTTGAAGCAAATTCCACAGGGAAATTGGTACTGTTTCAGCTGCTTGAATTCTGATAGGGACAGCTTTGGTTTTGTGCCTGGGAAGCATTACACATTGGAAGCCTTTAGGCGTATTGCTGATCGGTCAAGGAGGAGATGGTTTGGATCAGGGCCTGTTTCAAGGGTGCAGATGGAGAAAAAATTTTGGGAGATTGTCGAAGGATCAGTTGGTGAAGTTGAGGTTATGTATGGAAATGACTTGGATACATCTGTATATGGAAGTGGTTTCCCACGCGTTGCTGATCAGAAAATGCAATCCGTTGACGACAAGTTATGGCAAGAATACGCAACAATCCCATGGAATCTCAATAACTTGCCAAAGCTGAAAGGCTCAATGCTTAGATCTATTCAACACAATATCACTGGTGTTATGGTACCCTGGCTATATATTGGGATGTTGTTCTCATCTTTTTGCTGGCACTTCGAGGATCACTGCTTTTACTCAATGAATTATTTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGCAATCAAGCCAGTGCATTTGAGAAGGTGATGAGAAGTAGTCTTCCTGATCTTTTCGATGCACAACCTGATCTACTTTTCCAGCTTGTTACTATGTTAAACCCATCTGTCTTGCAAGAAAATGGGGTTCCTGTCTACAGCGTACTTCAGGAGCCTGGGAATTTTGTTATAACCTTCCCACGATCTTATCATGGAGGTTTCAATCTTGGTTTGAATTGTGCAGAGGCAGTAAATTTTGCTCCAGCTGACTGGCTACCTTTTGGTGCATTTGGTGCTGATCTCTATCAGCGGTATCACAAACCTGCTGTATTGTCGCATGCGGAGCTTCTTTGTGTAGTAGCCCAGCATGGCGATGTTGACAGCAGAGTATCTTCATATTTGAAGAAGGAATTGTTGAGAATATCAGATAAAGAAAAGTCTTGGAGAGAGAAACTATGGAAAGATGGTATAATTAAATATTCTCGCATGACTCCTCGCAAATGTCCACAATATGTGGGAACTGAGGAGGATCCAACATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCTGTTGTGTGCAGTTGCCGACCATCATCTTTTGTGTGCCTGGAGCACTCGGAACACCTTTGTGAGTGTAAGACTGTGAAGCTGCGTCTTCTCTACCGTCATTCACTTGCAGAATTGTTTGACTTGGCCTTTTCCATGGAAGAATTTACTTCTGATGACAAGGCTGAATGTAGAAGTGTTAGAAGGCAATCTTCTTGTCAGGGTGCTTTGACCAAAAAGGTGAAAGGTATCTCCGTTAATTTAAATCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACGATTCTTCAGAATCCATTTCTGAGCAATGCATTTGTTACTACACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCTGAGATGGACTCTGTTCGAGATATGGTGAAGACCTTGATTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGATTGCATAACAAAAATTGAGTTTTGGTATCAAGATTCAACTGTAAAGAAAGTTCATTTAGAATTCATTGATGAGTTATTGAGATTTAATCCTCCACCTTGCAATGAGCCTAATTATCATAAATTGAAGGAATACGCTGAAGAAGCGAGGTTATTAGTTCAGGATATTGATACTGCTTTATCGAGGTGTTCAAAGATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTGCCCATCTACATGAAGGAGAGTAAGAAATTAGAAGGGAGGATTTCTTTGATTAAGACATGGCTGGACAGTGTTAGAAAGTGTATCTCTGCGAGACATCCTACTGTCTTAGAGTTTAACATTCTTTACAAGTTAAAATCAGAGATCTTGGATCTTCAAGTTCATCTTCCAGAGATAGAGGTGTTTGAGAATATGGTAAATCGAGCTGAATCTTGTAGCATCCAATGTCGTGAGATGTTAGAAGGTCCTATGAATCTACAGAATGTTAGTTTGCTGCTTAAGGAATGGGACAATTTTGCAGTTGCTGTACCAGAGTTGCAGCTTCTAAGACAATACCATTCAGATACTGTGTTGTGGGTTGCCCATGTTAATGATCTTTTAAGGAGAGCTCATGTGCAGGGTGATGAACATAATACAGTTAATGAATTGATGCACATTTTTGAAGAAGGTTCATCTTTAAAAATTCAAGTTGATGAGTTGCCATTAGTTGAGATGGAGCTAAAGAAAGCTAGTTGCCGGGAGAATGCTTTGAAGGCTCGTGATTCTAGAATGCCTTTGGAATTCATTCAGCAACTGCTAGAGGAAGCTAAAATGCTGCACATTGAGGAAGAGAAACTATTCGTTAATTTATCTTGTGTTCTTGCTCTTGCCATACCTTGGGAGGAAAGGGCTAGAGAGATTCTTTCACATGAGAATCCTATTTCTGACTTTGAGGACATGATCAGGGATTCAGAAAACATATTTGCTATTCTTCCTTCACTTAATGATGTTAAAGACGCATTTTCTGAAGCTAATTTATGGTTAAGGAATTCAAAGCCATATTTAGTCTCTTCTCCGTGTGCTTCAAGTTCTTTGCTGAAAGTTGAGGACTTGCAGATGTTGGTTTCTGAATCAAAGCTTCTTAAAGTATCTTTGGGAGAAAGAAGGATGCTGGAACTAGTTTTGAAGAACTGCAAACTTTGGGAATGTGAAGCATCTTCTCTACTGGATGATTGTCAGTGCCTTTTCGAATTGGATAACTGTGTTGATGGAGTAAGCAGTGATTTAATGTTTAGGGTGGAAGATTTGATTGCAAGAATCCAATCTGCTATAGCATCTGGTGTTTCACTTGGTTTTGACTTCATAGAGATTTCAAAACTTCAAGCATCTTGTTCTACACTACAATGGTGCAAAAGAGCCCTTTGTTTCAGTGATTGTCCGCCATCGTTAGAGGATGTTTTGGAGGTTGCGGAAGGTCTTTCTCATTCCTGTGTTTCTGGTGTGCTGTTGAAAGTTCTGGTTGATGGAGTTGAATGGCTTAGGAGAGCGTTGGAGGAAATGTGTCGACCTTGTAATTCTAGAAGATGCCATTTGACTGAGGTTCAAGATACTCTTAATGATTATAAGAATGTTAATATGACCTTTGGAGCAGTATATGGTCAACTTGAAGAAGCCATTAGAAAACATATGTTATGGCAAGAACAAGTGCACCAATTTTTTGGCCTGAATTCTAGGGATCGATCTTGGTCATTGATGTTGCAGCTGAAGGAGCTTGGAGATACTGTTGCTTTCAGTTGCTCAGAGCTGGATATGATTTTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAACGATGCTTAGACAAAATAGGATCTTCTGTCCAAACTGACAATTTGCTGTTTAATGTGCTGGAGAAGATAAAACAGACTCTAGATAGATCATTGTTCATATATGGTGATGTTAAAGAAAGGAAGGATCAAAACCTCTGCATTTGCTGTCTTTTGCATTCTGAGTATCAGGAATTTCTTACTTGTTCGACTTGTATGGACTGCTATCATTTGCAGTGCATTGGACTAACAGCAAAGGACACCTGCATTGAAAATTACAAATGCCCTTACTGTGCAATTTTGATTGGTGAATCTTGTTATCCAAGTGGAAGTGGCCTCCTGAGGTTTGGTAAGAAGCATATTGAATTGAAAATTCTCATTGCTCTTCTATCGGAAGCTGAACATTTCTGTTTGAGTGTATGCAGGATTGATGAAATGGAAGTTCTGAATGAACTTGTTGAGAAAGCCCTTCTGTGCAAATCTTTCTTGAGAGAAATACTGAACTTTGCATCAACTGTTGTTGATGAAGATATAAGCATTGTCTCTGAAAAATTGATGAAAGCCATAAAGGCTAGCGATGTGGCTGGTGTCTATGATGAGCATGATAATTCTGACCTCGAGTTGGCTTTAGCAAAAAACTTGTGGAAAATTCAAGTAAATAGATTGCTAAATGGTGTATGCAAGCCCACAATCCGGCAGATTCAGAAGCATATGAATGAGGGAGTGGATATGGAAATATCAGCTGAAGATCACTATATGCTTAAACTTACAAATGTGAATTGCTTGGGTTTGCAGTGGGCAGAACTAGCAAAAAAGGTGGCAAACGATTCTGGGGCACTAAGCCTAGATAAAGTTTTGGAAGTAATAGTAGAAGGTGAAAACTTGCCTGTTGATGTTGATGAGGAACTCAAGATGTTGAGGTCTCGATGCATGCTTTACTGTATATGTCGAAAGCCTTATGATAAGAAAGGGATGATAGCATGCAAACAATGCAATGAATGGTACCATTTTGATTGCATGAAATTACCATGCACGCAGCAGCTCTACATTTGTCCTGCATGCAACCCCTGTGCAGAAGAACCATTGCCTACAAACCATGAGAGATTAGCTAGTGCTAAATTTGTGGAGCCTAAAACCCCATCTCCGAGGCACACAAACCCAAGAAAGAAACAGAAAAGAGATGTGGGCAATGTCACTTGCAAGATGTTTACAACAGCAACAGTAACAGCAGCAGAAGATAGAGATAGTAGTAGGTGTAGGAAATCAAATGGGATAGAATGTCTTAGGTGGCAAAACCGAAAGCCTTTTAGAAGAGCAGGTAAGAAACGTGTTGAGCTTCGAAGTCTTACTCCAATTCTATACACACAACGATAA 5538 0.4126 MGKGRPRAVEKGVVGASNTVTCCESTSVPSGPVYYPTEDEFKDPLDYIYKIRPEAEPYGICRIVPPKGWNPPFALDLDTFTFPTKTQAIHKLQARPAASDSMTFDLEYSRFLQDQCGKKSRKRVVFEGEDLDLCKLFNAVKRFGGYDKVVDAKKWGDVARFLRPAGKITDCAKHVLCQLYREHLYDYEEFYNKMNQGTAVNCKKGERDERKSDHRVQSSTSKKHPRRVSGLKVKDCKVHVEEERDQICEQCKSGLHGEVMLLCDRCDKGWHTYCLSPPLKQIPQGNWYCFSCLNSDRDSFGFVPGKHYTLEAFRRIADRSRRRWFGSGPVSRVQMEKKFWEIVEGSVGEVEVMYGNDLDTSVYGSGFPRVADQKMQSVDDKLWQEYATIPWNLNNLPKLKGSMLRSIQHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGNQASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPFGAFGADLYQRYHKPAVLSHAELLCVVAQHGDVDSRVSSYLKKELLRISDKEKSWREKLWKDGIIKYSRMTPRKCPQYVGTEEDPTCIICQQYLYLSAVVCSCRPSSFVCLEHSEHLCECKTVKLRLLYRHSLAELFDLAFSMEEFTSDDKAECRSVRRQSSCQGALTKKVKGISVNLNQLATEWLLQSSTILQNPFLSNAFVTTLRKAEQFLWAGSEMDSVRDMVKTLIEAQKWAEGIRDCITKIEFWYQDSTVKKVHLEFIDELLRFNPPPCNEPNYHKLKEYAEEARLLVQDIDTALSRCSKMSELELLYSRACGLPIYMKESKKLEGRISLIKTWLDSVRKCISARHPTVLEFNILYKLKSEILDLQVHLPEIEVFENMVNRAESCSIQCREMLEGPMNLQNVSLLLKEWDNFAVAVPELQLLRQYHSDTVLWVAHVNDLLRRAHVQGDEHNTVNELMHIFEEGSSLKIQVDELPLVEMELKKASCRENALKARDSRMPLEFIQQLLEEAKMLHIEEEKLFVNLSCVLALAIPWEERAREILSHENPISDFEDMIRDSENIFAILPSLNDVKDAFSEANLWLRNSKPYLVSSPCASSSLLKVEDLQMLVSESKLLKVSLGERRMLELVLKNCKLWECEASSLLDDCQCLFELDNCVDGVSSDLMFRVEDLIARIQSAIASGVSLGFDFIEISKLQASCSTLQWCKRALCFSDCPPSLEDVLEVAEGLSHSCVSGVLLKVLVDGVEWLRRALEEMCRPCNSRRCHLTEVQDTLNDYKNVNMTFGAVYGQLEEAIRKHMLWQEQVHQFFGLNSRDRSWSLMLQLKELGDTVAFSCSELDMILSEVEKVENWKKRCLDKIGSSVQTDNLLFNVLEKIKQTLDRSLFIYGDVKERKDQNLCICCLLHSEYQEFLTCSTCMDCYHLQCIGLTAKDTCIENYKCPYCAILIGESCYPSGSGLLRFGKKHIELKILIALLSEAEHFCLSVCRIDEMEVLNELVEKALLCKSFLREILNFASTVVDEDISIVSEKLMKAIKASDVAGVYDEHDNSDLELALAKNLWKIQVNRLLNGVCKPTIRQIQKHMNEGVDMEISAEDHYMLKLTNVNCLGLQWAELAKKVANDSGALSLDKVLEVIVEGENLPVDVDEELKMLRSRCMLYCICRKPYDKKGMIACKQCNEWYHFDCMKLPCTQQLYICPACNPCAEEPLPTNHERLASAKFVEPKTPSPRHTNPRKKQKRDVGNVTCKMFTTATVTAAEDRDSSRCRKSNGIECLRWQNRKPFRRAGKKRVELRSLTPILYTQR 1845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01336 1845 Pfam ARID/BRIGHT DNA binding domain 121 188 IPR001606 GO:0003677
Arst5g01336 1845 SMART JmjN_1 30 71 IPR003349 -
Arst5g01336 1845 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Arst5g01336 1845 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Arst5g01336 1845 Pfam JmjC domain, hydroxylase 418 534 IPR003347 -
Arst5g01336 1845 SUPERFAMILY ARID-like 81 201 IPR036431 GO:0003677
Arst5g01336 1845 MobiDBLite consensus disorder prediction 202 219 - -
Arst5g01336 1845 FunFam Predicted protein 353 556 - -
Arst5g01336 1845 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Arst5g01336 1845 Pfam jmjN domain 32 65 IPR003349 -
Arst5g01336 1845 SMART cupin_9 385 551 IPR003347 -
Arst5g01336 1845 Pfam C5HC2 zinc finger 628 677 IPR004198 -
Arst5g01336 1845 CDD ARID 104 188 - -
Arst5g01336 1845 SMART PHD_3 247 293 IPR001965 -
Arst5g01336 1845 SMART PHD_3 1441 1487 IPR001965 -
Arst5g01336 1845 SMART PHD_3 1701 1743 IPR001965 -
Arst5g01336 1845 MobiDBLite consensus disorder prediction 202 227 - -
Arst5g01336 1845 CDD PHD_RSF1 248 292 - -
Arst5g01336 1845 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Arst5g01336 1845 SUPERFAMILY FYVE/PHD zinc finger 1695 1750 IPR011011 -
Arst5g01336 1845 SMART ARID_2 95 188 - -
Arst5g01336 1845 Pfam PLU-1-like protein 912 1187 IPR013637 -
Arst5g01336 1845 Pfam PLU-1-like protein 1142 1397 IPR013637 -
Arst5g01336 1845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1687 1744 IPR013083 -
Arst5g01336 1845 SMART bright_3 99 193 IPR001606 GO:0003677
Arst5g01336 1845 MobiDBLite consensus disorder prediction 1761 1782 - -
Arst5g01336 1845 SUPERFAMILY FYVE/PHD zinc finger 238 295 IPR011011 -
Arst5g01336 1845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1423 1490 IPR013083 -
Arst5g01336 1845 SUPERFAMILY FYVE/PHD zinc finger 1437 1487 IPR011011 -
Arst5g01336 1845 ProSitePatterns Zinc finger PHD-type signature. 1442 1486 IPR019786 -
Arst5g01336 1845 ProSitePatterns Zinc finger PHD-type signature. 1702 1742 IPR019786 -
Arst5g01336 1845 FunFam Transcription factor jumonji (JmjC) domain-containing protein 17 121 - -
Arst5g01336 1845 ProSiteProfiles JmjC domain profile. 385 551 IPR003347 -
Arst5g01336 1845 Gene3D Cupin 13 134 - -
Arst5g01336 1845 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 904 - -
Arst5g01336 1845 SUPERFAMILY Clavaminate synthase-like 377 571 - -
Arst5g01336 1845 Gene3D Cupin 237 556 - -
Arst5g01336 1845 Pfam PHD-finger 247 294 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01336 Arst-Chr5 14256522 14271368 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01336 40 95 JUMONJI Transcription Factor Family AT4G20400 51.667 7.12e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Arst5g01336 PLU-1 2.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01336 K11446 - gmx:100789512 2925.96