Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01279 ATGGTGAAGATTGCTGTTGGTTCTTTTGATGACTCTTTTAGCGTTACCTCTCTCAAGGCTTATTTGGCAGAGTTCATTGCCACTCTTATCTTCGTCTTTGCTGGTGTTGGTTCAGCCATAGCCTACAATGAGCTTACATCAGATGCAGCTTTGGACGCGCCAGGGCTGGTGGCGGTGGCGGTGGCGCACGCATTTGCTCTGTTTGTAGGAGTGTCCATCGCTGCCAACATCTCAGGTGGCCACTTGAACCCAGCTGTCACTTTTGGATTGGCCATTGGAGGCAACATTACCCTCCTCACTGGTCTCTTCTACTGGATTGCCCAATTGCTTGGCTCCATTGTCGCATCTCTCCTCCTAAGTTATGTCACAGCTAAGAGCATTCCAACCCATGGAGTGGCTGGGATAAACGTTTTTGCTGGAGTGGTGTTCGAGATCGTTGTTACTTTTGGATTGGTGTACACTGTATACGCTACCGCAGCTGACCCCAAAAAGGGCTCACTTGGCACCATTGCACCCATTGCTATTGGGTTCATTGTGGGTGCCAACATCCTAGCTGCTGGCCCATTCAGTGGTGGATCAATGAACCCGGCCCGTTCATTCGGCCCAGCAGTTGTTAGTGGTAACTTCGCTGACAACTGGATCTACTGGGTTGGCCCGTTGATTGGTGGGGGCTTGGCTGGGCTTATTTATGGTGATGTTTTCATTGGTTCCTATACCCCTGCCCCAGCCACTGAAAACTACCCTTGA 747 0.5074 MVKIAVGSFDDSFSVTSLKAYLAEFIATLIFVFAGVGSAIAYNELTSDAALDAPGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTFGLAIGGNITLLTGLFYWIAQLLGSIVASLLLSYVTAKSIPTHGVAGINVFAGVVFEIVVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFADNWIYWVGPLIGGGLAGLIYGDVFIGSYTPAPATENYP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01279 248 Gene3D Glycerol uptake facilitator protein. 2 239 IPR023271 -
Arst5g01279 248 PANTHER AQUAPORIN-8 4 236 IPR034294 -
Arst5g01279 248 Pfam Major intrinsic protein 14 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst5g01279 248 NCBIfam MIP family channel protein 23 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst5g01279 248 FunFam Probable aquaporin TIP1-1 2 247 - -
Arst5g01279 248 CDD MIP 19 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst5g01279 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Arst5g01279 248 SUPERFAMILY Aquaporin-like 14 238 IPR023271 -
Arst5g01279 248 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst5g01279 248 PRINTS Major intrinsic protein family signature 176 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst5g01279 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst5g01279 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst5g01279 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst5g01279 248 PRINTS Major intrinsic protein family signature 213 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01279 Arst-Chr5 13789973 13791664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01279 1 245 Major Intrinsic Protein MIP AT5G47450 81.377 4.21e-135 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01279 K09873 - fve:101300912 404.831