Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01271 ATGGAGAGGCACAGATGCAAGCTTTGTTCGAGGACATTCGCCAATGGCAGAGCCCTCGGTGGTCACATGAAGGCTCACTTAGCCACGCTTCCTCTGCCACCCAAGCCTCATCAACCACCTCCTCAACCACTTTCTTTTGAGTACTCCTCTTCTTCTTCCTCTTCAGAATCAGAACACGATGACGATGATGATGAAGAAAAAGGTTATGGGTTAAGAGAGAACCCAAAGAGAAGTTTCAGGGTAAAATCCTCCATTATCAACCTTACAAACAAGAGGACTAAGCTCATGAGTTTCATGGAGTCACCAGCATCAATAGCAACAGAGGCAGCAGAGCCTGTTAGCTCCGTTTCCGATACTTCGCCGGAAGAAGACCTGGCCATGTGCCTCATCATGCTGTCAAGGGACAAATGGAGAAAGACAAGTTTTGAAGAAGAAGAAGAGATGAAGTTGAAGAACAAGAAGGTTCTTCGAGGGAAGCATCATCATCATCATCATCATCGTCTGCAGTGTGACAAGTGTGGGAAAACGTTTCGATCTTCAGGGGCATTGGGGAGCCACAGAAGCATATGCCTCTGTGATGAAGCTGATGGAAGTGAAAGAATCTTTCAATGCCCGTATTGTTCAAAGGTTTTCGGGTCGGGTCAAGCACTCGGTGGCCATAAGAGATCTCATCTTCTCCCATCTTCTTCTTCTTCTTCTCCTGCTTCCATTATCAATGCTAATCTTAGATTGAAACAACAAAGCTTCATAGATCTCAACTTGCCAGCTCCACCTGAAGAAGACGACCTTAGTGTTCTCTCCGATGCATAA 810 0.4593 MERHRCKLCSRTFANGRALGGHMKAHLATLPLPPKPHQPPPQPLSFEYSSSSSSSESEHDDDDDEEKGYGLRENPKRSFRVXKSSIINLTNKRTKLMSFMESPASIATEAAEPVSSVSDTSPEEDLAMCLIMLSRDKWRKTSFEEEEEMKLKNKKVLRGKHHHHHHHRLQCDKCGKTFRSSGALGSHRSICLCDEADGSERIFQCPYCSKVFGSGQALGGHKRSHLLPSSSSSSPASIINANLRLKQQSFIDLNLPAPPEEDDLSVLSDA 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01271 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Arst5g01271 270 ProSitePatterns Zinc finger C2H2 type domain signature. 205 225 IPR013087 -
Arst5g01271 270 Pfam Zinc finger, C2H2 type 170 189 IPR013087 -
Arst5g01271 270 MobiDBLite consensus disorder prediction 25 76 - -
Arst5g01271 270 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 269 IPR044303 GO:0006355
Arst5g01271 270 Pfam C2H2-type zinc finger 203 225 - -
Arst5g01271 270 Pfam C2H2-type zinc finger 3 28 - -
Arst5g01271 270 Gene3D Classic Zinc Finger 168 225 - -
Arst5g01271 270 SMART c2h2final6 4 26 IPR013087 -
Arst5g01271 270 SMART c2h2final6 169 189 IPR013087 -
Arst5g01271 270 SMART c2h2final6 203 225 IPR013087 -
Arst5g01271 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 225 IPR013087 -
Arst5g01271 270 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Arst5g01271 270 SUPERFAMILY beta-beta-alpha zinc fingers 169 225 IPR036236 -
Arst5g01271 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 190 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01271 Arst-Chr5 13613334 13615067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01271 1 267 C2H2 Transcription Factor Family AT3G60580 33.548 2.43e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst5g01271 zf-C2H2_6 1.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01271 - - adu:107488121 482.256