Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01231 ATGGGGAGACAACCATGCTGTGACAAAGTTGGGGTGAAGAAAGGTCCATGGACAAGTGAAGAAGATAAGAAGCTTATGAACTTCATCATGAGCAACGGACAGTGCTGTTGGAGAACTGTGCCTAAGCTTGCAGGCCTTAAGCGTTGTGGAAAGAGCTGCCGTCTTCGTTGGACCAATTATCTTCGCCCTGACTTGAAGAGAGGCCTCCTCACTCATTCTGAGGAGCAACTTGTCATCGATCTCCATGCTCGTCTTGGCAACAGGTGGTCTAAGATAGCTTCAAGGTTACCAGGGAGGACAGATAATGAGATTAAGAATCATTGGAACACACACATCAAGAAAAAGCTCCTTAAGATGGGTATTGACCCTGTTACTCATGAACCTCTTGCTAAGCAACAGCTAGTTTCATCATCATCATCTTCATCCGAATCAGCAGAGCAATTGCCAGAACCTCAACAACAGCTCAAGGAAACTGTTGTTAACAAGAACGATAATAATGGGGTACCGGTTCCCATCAATTCACAGCAGGAGAACTCGTCGAGTTCGTCACCACCAACTGAAAACTCTTGTTCTGCATCGGGGGATGGGGATGAATCTCTAATATTGAACAGCTTGTGGCTTGATGATACTCCACTCATTGATGCATTATGGGATACTACTCCTACATCTTGGTTATTGGACTGTCAAGACTTTGGCATTCATGACTTTGGTTTTAACTGTTTCAATGAGACTGAGTCAAATGCTCTCCAAACTCTGGAAACAGAGGAAAAAAAATGGCATTAG 783 0.4419 MGRQPCCDKVGVKKGPWTSEEDKKLMNFIMSNGQCCWRTVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLTHSEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLAKQQLVSSSSSSSESAEQLPEPQQQLKETVVNKNDNNGVPVPINSQQENSSSSSPPTENSCSASGDGDESLILNSLWLDDTPLIDALWDTTPTSWLLDCQDFGIHDFGFNCFNETESNALQTLETEEKKWH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01231 260 SMART sant 13 63 IPR001005 -
Arst5g01231 260 SMART sant 66 114 IPR001005 -
Arst5g01231 260 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 189 - -
Arst5g01231 260 CDD SANT 16 61 IPR001005 -
Arst5g01231 260 FunFam MYB transcription factor 70 147 - -
Arst5g01231 260 FunFam MYB transcription factor 11 67 - -
Arst5g01231 260 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Arst5g01231 260 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Arst5g01231 260 Gene3D - 70 165 - -
Arst5g01231 260 MobiDBLite consensus disorder prediction 131 195 - -
Arst5g01231 260 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Arst5g01231 260 Gene3D - 12 67 - -
Arst5g01231 260 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Arst5g01231 260 CDD SANT 71 112 IPR001005 -
Arst5g01231 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Arst5g01231 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Arst5g01231 260 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01231 Arst-Chr5 12999175 13000864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01231 1 251 MYB Transcription Factor Family AT4G12350 50.342 8.67e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst5g01231 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01231 K09422 - gmx:100786965 357.066