Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01176 ATGATGCAAGAACCAAGCTTGGGTATGATGGGTGGAGGAGGAGAGATGTCTTCAGCAACAGGGTCCGGCGGCGAGCAGCAACAGCGGCAGCTGAAGGCGGAGATAGCAACACACCCGCTGTACGAGCAGGTTCTGGCAGCACACGTGGCGTGCCTGAGAGTTGCAACGCCAATAGACCAGCTTCCACTTATAGACGCACAGCTATCACAATCACACCATGTTCTTCGCTCCTATGTCTCTCAACACACACTCTCTCTCTCTCCTCACGACCGTCAAGACCTTGATAATTTCCTCGCTCAGTACTTGATAGTGTTGTGTACTTTCAAAGAGCAGCTTCAGCAACATGTCAGAGTCCATGCCGTCGAGGCTGTCATGGCCTGCCGTGATATTGAAAATACCTTGCAAGCTCTCACCGGAGTGAGCCTGGGGGAAGGAAGTGGGGCAACAATGTCAGATGATGAAGATGAATTTCAGATGGATTTCTGTTTGGATCAGTCGAGTGGTGGTGGTGGTGATGACATGATGGGATTTGGTCCCTTACTCCCTACGGAATCAGAAAGGTCATTGATGGAAAGAGTCCGTCAAGAACTCAAGATTGAACTGAAGCAAGGATTCAAGTCAAGGATTGAAGATGTTAGGGAAGAAATCCTGAGGAAACGTAGAGCTGGCAAATTACCCGGTGACACCACTTCTGTCTTGAAGAACTGGTGGCAGCAGCATGCTAAGTGGCCTTATCCAACTGAAGATGACAAGGCAAAACTAGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAACAACTGGTTCATCAACCAAAGGAAACGCAATTGGCACAGTAACTCTCAATCAGTTACCTCCCTCAAGTCCAAGCGCAAAAGAATGTAA 885 0.4893 MMQEPSLGMMGGGGEMSSATGSGGEQQQRQLKAEIATHPLYEQVLAAHVACLRVATPIDQLPLIDAQLSQSHHVLRSYVSQHTLSLSPHDRQDLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEFQMDFCLDQSSGGGGDDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRM 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01176 294 Pfam KNOX2 domain 87 138 IPR005541 GO:0003677|GO:0005634
Arst5g01176 294 SUPERFAMILY Homeodomain-like 218 283 IPR009057 -
Arst5g01176 294 SMART HOX_1 218 283 IPR001356 GO:0003677
Arst5g01176 294 Pfam Homeobox KN domain 236 275 IPR008422 GO:0003677|GO:0006355
Arst5g01176 294 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 280 - -
Arst5g01176 294 Gene3D - 215 289 - -
Arst5g01176 294 CDD homeodomain 219 280 IPR001356 GO:0003677
Arst5g01176 294 SMART KNOX1_2 29 73 IPR005540 GO:0003677|GO:0005634
Arst5g01176 294 FunFam homeobox protein knotted-1-like 3 isoform X1 217 278 - -
Arst5g01176 294 Pfam KNOX1 domain 31 72 IPR005540 GO:0003677|GO:0005634
Arst5g01176 294 ProSiteProfiles 'Homeobox' domain profile. 216 279 IPR001356 GO:0003677
Arst5g01176 294 ProSiteProfiles ELK domain profile. 196 216 IPR005539 GO:0003677
Arst5g01176 294 MobiDBLite consensus disorder prediction 1 30 - -
Arst5g01176 294 SMART KNOX2_2 84 139 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01176 Arst-Chr5 12224003 12227912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01176 2 292 Homeobox Transcription Factor Family AT1G62990 78.644 4.30e-171 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Arst5g01176 KNOX2 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01176 - - tpra:123907403 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01176 5 12224003 12227912 Arst5g01176 5 12224003 12227912 ECH