Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01167 ATGGCTTCATCATCATCATCTTCAAAGAGGCACCCGCTGTACCACGGAATCAGGTGTCGAGGAGGAAAATGGGTCTCCGAAATCCGGCAGCCACGTAAGGCTTCAAGAATATGGCTGGGGACGTTCCCCACGGCTGAGATGGCGGCTGCCGCCTACGACGTTGCCGCATTAGCACTCAAAGGCGACAGCGCCGTTCTCAACCTTCCTGAGTCAGCTGGAAAGTACCAAATTCCTGTAACTAACTCCCCTGATGACATCCGCAGGGCTGCCACTGCTGCTGCCGCTTTGATGAAGAAGAACCCTCAAGAACCCATCACCACTCCTCACATTATTACTGTTAATAATAATGATAATAACACTCTTGTTGATGGTATTAACAACAACCATATTATTAATTCGTCATCATGGTATGAGGATAATGATTTCATGGACGAGGAAGCTATATTCCGCATGCCAAGTTTGCTGGTGGATATGGCTGAGGGCATGCTTCTGTCGCCGCCGAGAATAATACTCAGCCCATCTCCGCCATCGTACAACTCCGGTGACGGAGGTGACACTTTGTGGAGTTACTTTTGA 576 0.4913 MASSSSSSKRHPLYHGIRCRGGKWVSEIRQPRKASRIWLGTFPTAEMAAAAYDVAALALKGDSAVLNLPESAGKYQIPVTNSPDDIRRAATAAAALMKKNPQEPITTPHIITVNNNDNNTLVDGINNNHIINSSSWYEDNDFMDEEAIFRMPSLLVDMAEGMLLSPPRIILSPSPPSYNSGDGGDTLWSYF 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01167 191 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Arst5g01167 191 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Arst5g01167 191 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Arst5g01167 191 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
Arst5g01167 191 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Arst5g01167 191 SMART rav1_2 13 75 IPR001471 GO:0003700|GO:0006355
Arst5g01167 191 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 190 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01167 Arst-Chr5 12083702 12084277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01167 10 190 AP2-EREBP Transcription Factor Family AT4G25490 46.448 5.59e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst5g01167 AP2 3.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01167 - - gmx:100811020 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01167 5 12083702 12084277 Arst5g01167 5 12083702 12084277 ECH