Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01160 ATGATTTCAGCTCTTTCGTGGATACCGATAGGTGCTTCGAAGGTGGAACCCACAATAGCTGAACCTCCTTCCAAGGAAGAAATTCAAGATATAATCACCACCGCCGCCGCCAGTGAAAATGAGGAAGAAGCAGGGGATGAACGCATGGATGATGCCGGTGGTGCCGTTGATGAAGTTGTGCGAGCACTCAATGTTGCTGATGCTCTCGGGAAGGCTGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACGTTACGATGATGAAGATGAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATTAAAGATAAGAACGATGATGATGACTCTGAGGAACTCGAAGACATGATTATTAATCCAACTGATTCCGTCATTGTTTGTGCTCGTACTGAGGATGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGACGCCGGTACTAGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCTTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAGAAAAAGAAGAAGGGGAAGAAGAAATCAATCAAATACAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTGCCTGGAACAAAAAGATCAGGAATGTACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGGAAGTGTGAGAGTACAATGGAGCATCACTCAGACAAGGTTCAAGCAGTTGCTTGGAATCATCATGAACCAAAAATTCTTCTTAGTGGTTCATTTGATCATACTGTGATCCTGAGGGATGGAAGGATGCCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTAACCACGATTTTGTGGTGAGTCTCGAGGATGGTACTGTCAAGTGTTTTGATGTTCGGACCGCAATGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAATGTGTCAGCACCTAATCTACTTGCTACTGGATCGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAACAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTTTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA 1443 0.438 MISALSWIPIGASKVEPTIAEPPSKEEIQDIITTAAASENEEEAGDERMDDAGGAVDEVVRALNVADALGKADKLDDIALGLKELDMERYDDEDEGVEVFSSGIGDLYYPSNDLDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDAGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKKGKKKSIKYKDDSHTDSVLGLAWNKKIRNVLASASADKRVKIWDVATGKCESTMEHHSDKVQAVAWNHHEPKILLSGSFDHTVILRDGRMPSHPGYKWSVTADVESLAWDPHTNHDFVVSLEDGTVKCFDVRTAMSESTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGSMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01160 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 282 - -
Arst5g01160 480 FunFam Putative WD repeat-containing protein C17D11.16 327 469 - -
Arst5g01160 480 SUPERFAMILY WD40 repeat-like 195 465 IPR036322 GO:0005515
Arst5g01160 480 SMART WD40_4 173 212 IPR001680 GO:0005515
Arst5g01160 480 SMART WD40_4 419 459 IPR001680 GO:0005515
Arst5g01160 480 SMART WD40_4 374 414 IPR001680 GO:0005515
Arst5g01160 480 SMART WD40_4 280 320 IPR001680 GO:0005515
Arst5g01160 480 SMART WD40_4 235 277 IPR001680 GO:0005515
Arst5g01160 480 SMART WD40_4 324 363 IPR001680 GO:0005515
Arst5g01160 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 426 468 IPR001680 GO:0005515
Arst5g01160 480 Pfam WD domain, G-beta repeat 378 414 IPR001680 GO:0005515
Arst5g01160 480 PRINTS G protein beta WD-40 repeat signature 401 415 IPR020472 -
Arst5g01160 480 PRINTS G protein beta WD-40 repeat signature 446 460 IPR020472 -
Arst5g01160 480 PRINTS G protein beta WD-40 repeat signature 264 278 IPR020472 -
Arst5g01160 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 381 419 - -
Arst5g01160 480 Gene3D - 326 476 IPR015943 GO:0005515
Arst5g01160 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 286 IPR001680 GO:0005515
Arst5g01160 480 FunFam Transducin/WD40 repeat-like superfamily protein 71 325 - -
Arst5g01160 480 ProSitePatterns Trp-Asp (WD) repeats signature. 264 278 IPR019775 -
Arst5g01160 480 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 474 IPR044285 GO:0006364
Arst5g01160 480 Gene3D - 83 325 IPR015943 GO:0005515
Arst5g01160 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 381 423 IPR001680 GO:0005515
Arst5g01160 480 Pfam Anaphase-promoting complex subunit 4 WD40 domain 243 301 IPR024977 -
Arst5g01160 480 ProSitePatterns Trp-Asp (WD) repeats signature. 401 415 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01160 Arst-Chr5 11970817 11975372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01160 261 459 U-box Gene Family AT2G33340 30.769 5.61e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01160 K14791 - gmx:100807947 697.582