Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01147 ATGTCCAACACACGCTCCCCGACGCGTTCCTCCGAGGACATCGTCGATTCCACGCCGTTTCTCGGCAATACCGGGACCGGCGCTGCCACCGACGAATTCAATTCAGGCCGCCGATTCGTACGGCGGCAGAGCCTCCGACAGGCGGCGAGGTTCCTCCGGCAGGCGAGCGGGAGGAGGATGATGAGAGAGCCGTCGATGGTGGTGCGGGAGACGGCGGCGGAGCAATTGGAGGAGAGGCAGAGCGATTGGGCGTATTCGAAGCCGGTGGTGATCCTCGACATGGTTTGGAACTTCGCGTTCGTCGTGGTGGCGGCGACGGTGTTGTTTCTGAGCAGGAAAGAATCTCCGGAAATGCCTCTGAGGCTGTGGATTATAGGTTACGCTATGCAGTGCGTCCTTCACATGGTTTGCGTTTGCGTTGAGTACAGGAGAAGGAGGAGGATCCAGCGGTCACAGTCTCTGAACGGTGGTGGAGAAGAAAGGGTTGGAAGCAGTGGGAATTTGAGTTCACCTTCGAGGGAGGGCTCTTCGCACTATGTCACATTGGGCCAGTTGGATGAAGACAGTACTAGTGTTGCAAAGCATTTGGAGTCTGCAAATACGATGTTTTCTTTTATTTGGTGGATTATTGGGTTCTACTGGGTATCAGCTGGTAGTCAATCTTTAGTCGAAGAATCTCCTCTTCTTTACTGGCTATGTATAATCTTCCTTGGTTTTGATGTCTTCTTTGTTGTATTCTGTGTTGCACTGGCATGTATTATTGGTATCGCTGTTTGCTGTTGTCTTCCATGCATCATTGCCCTTCTTTATGCAGTTGCAGACCAGGAAGGAGCATCAAAAGAGGATATTGAGCAGCTATCAAAGTATAAATTTCGGAAAGTTGAAAACAATGAGAAACTTGCTGGAAATACACAAGGACCTGTTGGAGGAGTAATGACCGAATGCCGATCTGACTCACCTAGTGAACATGTTCTTGCTGAGGAGGACGCGGAATGTTGCATCTGCCTTTCTTCCTATGACGATGGAGTTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGCTCCTGCGTTGATAAATGGCTGTATATCAATGCTACTTGCCCACTCTGCAAGTATAACATCTTGAAAAGTAGCAACCTCGGTCAAGAGGAAGTGTAG 1164 0.4974 MSNTRSPTRSSEDIVDSTPFLGNTGTGAATDEFNSGRRFVRRQSLRQAARFLRQASGRRMMREPSMVVRETAAEQLEERQSDWAYSKPVVILDMVWNFAFVVVAATVLFLSRKESPEMPLRLWIIGYAMQCVLHMVCVCVEYRRRRRIQRSQSLNGGGEERVGSSGNLSSPSREGSSHYVTLGQLDEDSTSVAKHLESANTMFSFIWWIIGFYWVSAGSQSLVEESPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKYKFRKVENNEKLAGNTQGPVGGVMTECRSDSPSEHVLAEEDAECCICLSSYDDGVELRQLPCGHHFHCSCVDKWLYINATCPLCKYNILKSSNLGQEEV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01147 387 FunFam E3 ubiquitin-protein ligase At1g12760 318 383 - -
Arst5g01147 387 SMART ring_2 332 372 IPR001841 -
Arst5g01147 387 SUPERFAMILY RING/U-box 323 379 - -
Arst5g01147 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 385 IPR013083 -
Arst5g01147 387 MobiDBLite consensus disorder prediction 153 177 - -
Arst5g01147 387 PANTHER TARGET OF ERK KINASE MPK-1 55 378 - -
Arst5g01147 387 CDD RING-H2_RNF6-like 331 373 - -
Arst5g01147 387 MobiDBLite consensus disorder prediction 1 28 - -
Arst5g01147 387 Pfam Ring finger domain 331 373 IPR001841 -
Arst5g01147 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01147 Arst-Chr5 11775242 11779271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01147 24 380 C3H Transcription Factor Family AT1G68070 49.167 4.11e-120 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01147 - - qsa:O6P43_034207 590.882