Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01116 ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCCGCTATCGTTTTCTGCGCCGCTGATGAGGCCGCACTCTGCCGTGCCTGCGATGAGAAGGTTCACATGTGTAATAAACTTGCTAGCAGGCATGTAAGAGTGGGTCTGGCAAGTCCAAGCGATGTGCCTCGTTGTGATATATGCGAGAATGCACCTGCATTCTTCTATTGCGAGACAGATGGAAGCTCGCTTTGTTTGCAGTGCGACATGATAGTTCATGTTGGTGGTAAAAGAACACATGGAAGATATCTTCTATTTAGGCAAAGAGTTGAGTTTCCAGGAGATAAACCTAGTAACATAGAAAACCCAGCTTCTCAACCTATGGAACCAGGGGAGACTAAGAGGGGACAAAATCCACTTCCCAAACTAAAAATGGGGGAGAAGCAACAAAACCACAGGATGCCGCTGCTTTCAACACCAGATCCTGATGCTGACGGACATGCCAAGATGGAGACTAAAATGATTGATTTGAACATGAAGCCTAACAGAATACATGAACAAGCATCAAATAATCAGCCATAA 555 0.4577 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPSNIENPASQPMEPGETKRGQNPLPKLKMGEKQQNHRMPLLSTPDPDADGHAKMETKMIDLNMKPNRIHEQASNNQP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01116 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 135 - -
Arst5g01116 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Arst5g01116 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Arst5g01116 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Arst5g01116 184 FunFam B-box zinc finger protein 19 2 92 - -
Arst5g01116 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Arst5g01116 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Arst5g01116 184 CDD Bbox1_BBX-like 56 96 - -
Arst5g01116 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Arst5g01116 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Arst5g01116 184 CDD Bbox1_BBX-like 4 47 - -
Arst5g01116 184 Gene3D Classic Zinc Finger 2 91 - -
Arst5g01116 184 MobiDBLite consensus disorder prediction 105 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01116 Arst-Chr5 11313248 11315579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01116 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.749 3.20e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Arst5g01116 zf-B_box 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01116 - - gmx:100780544 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00718 3 5110874 5113754 Arst5g01116 5 11313248 11315579 ECH
Arst5g01116 5 11313248 11315579 Arst5g01116 5 11313248 11315579 ECH
Arst3g00700 3 4944323 4945652 Arst5g01116 5 11313248 11315579 ECH
Arst7g02275 7 52667432 52668869 Arst5g01116 5 11313248 11315579 ECH
Arst5g01116 5 11313248 11315579 Arst3g00718 3 5110874 5113754 PCT