Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01112 ATGGAGCAACAACAGCTTCAGCAGAGTGGAGCTGCCACCGCCGGAGCAGCACCGCCGGTGGAGGGAGCTAGGGATTTGGGAGATTCGCAGCTCGTTGGAGTTCCCGCTGCGGTTGACGGCGATGTTGTCATGGCGGAGAGGGACGGCAGCGGGAGTGTTCCCAATCTGGAGGTGGCCGTCGGGGACGGCGGCGCCACGGCGGTTAAGAGGAAGCGGGGTCGTCCGGCGAAGGGTGCTCCGAGGGCGTCGGCGACGGGAGCGGCCGCGAGGCTGCAGCAGAAGAAGGAGGAAGAGGAAGAGGAGGATGTTTGCTTCATATGCTTCGATGGTGGAAGCTTAGTTCTTTGTGATCGCCGGGGTTGTCCTAAAGCATATCATCCCGCGTGTATTAAGCGAGACGAGGCCTTCTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCTTTTGTCAGAAGGCCTCCCAATTTTTGTGCTATACTTGTACATATTCGGTGTGCAAGAGTTGTACAAAATATGCTGATTTTGTGTGTGTCAGAGAAAATAAAGGTTTGTGCGGAATATGCATGAGAACTATAATGCTGATTGAAAACAATGGCCAGGGAAATTCGGAGAAGTGTGAAGTGGATTTTGATGACAAAACCAGCTGGGAATATCTTTTCAAGGTGTATTGGATGTTTTTGAAAGGGAAGATATCTTTAACATTTGATGAGCTCCTTCGAGCTAAAAACCCTTGGACAGGTGTTTCTCCATTGGGTGGTAAGGTTGAATGTCCCCGTGAAATTTATAATACTAAGGATGACAAAGGTTCTGGTTCAGAGAACTCCTGTATTGACATAGAATCAAATAATTTGAAAAACAAGAAATCTAGGAGACAGCCAATGCTTCATAGCAATGGGGTTGGCTCCGATATGATAACTTCAGCCGGTGACAACTGTGTGCCTTTGCCTGAATGCTCAAATTGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAGTGGTGATACATCTCGCCTGTCTCAATTTGATGTCCAGGGTCTCTTGTTAGAGTATGTGAAGAAGAACAATCTTCGAGACCCCCAGCAGAAATGCCAAATTGTTTGTGATCATAGACTACTAAAATTGTTTGGAAGAGCACGTGTTGGTCACATTGAAATGTTAAAGCTCCTTGAACCCCACTTTCTTACAAAAGAGAATGGCCCTGCAGAAGATACACTTAGAGCAGGAGTCACGAACACTGTTGCTAGCGAAGGGGAGGCAAAAGACAATTGCAATAAGCAGTTGATGTTAGTTGATGATAAGGAATGTAAAACAGATAAAAAAGATGATGTGCATTTGCCACAAAATAATCCAGATGTGTATGCTGCAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTTTTGGAAAATCTAACTGAAGATGCTGAAAGTGTTCGTGACAAGGTTGTTGGTTCATTTGTGCGGATAAGGATCACTAGTAGTGACAAAAAACAAGAGATGTATAGGCTTGTGCAAGTTGTAGGTACAAGTAAGGCTGCTGAGCCTTACAAAATTGGAACAAGAACAACTGATATGATGCTTGAGATTTTAAACTTAAATAGGAAGGAGGCCATATCAATAGATGAGATTTCAAATCAGGAGTTCTCTGAGGATGAATGCAAGCGCTTGCGTCAAAGTATAAAATATGGGCTTTCCAATAGATTGACTGTGGGTGAGATCATGGACAAAGCATTGACATTTCAAGCAATGAGAGTTAATGATTTGCTGGAAGCTGAGATACTGCGGCTTACTCATCTTCGTGATAGAGCAAGTGAAAAAGGGCATAGAAAAGAGCTCAGAGAATGTGTGGAGAAGTTACAGCTACTAAACACACCAGAGGAACGACAGCGCAGGATGCGTGAAATTCCAGAGGTACACTCTGACCCAAATCTGGATTTGATGTTCGAGTCTGATGAAGATGCGGGAGAGTCAGATGAAAGGAAGCAAGATGGCAATATATGGTCAAAGTATCCTGGTTTTGACAGAAAAGAGAAGGAGCCCACTTTGCCTAAAAGTTGTGATAGTGTCTTGAATGATGATGGATGCAGAACACAAGATTTTTCTGCTGCTGCCCGTGAACAGAATGGCAATGCCTGCGTGACAAAAAGTCAGATAAAACCTAATGAGACAGTGTTTGATGATGACCCTAATGTAGTTGTGAAATCAGAACCATCTGGTGTTGCGTTGGACATTTCATTGTCTCCTCAATCTGTAGGGGTAGAACAGTCATTCAATGATTTTGTGAATGATAAATCATGGCATTATCAGGACCCAACTGGGAAGGTTCAAGGACCTTTTTCCATGTTGCAACTGTTTAAGTGGAATGCAAGTGGAGGTTTCCCTCCTAATCTCAGGATATGGAGGATAAATGAAAAACAAGATAGCTCTATATTGTTAACCGATGCCCTAAGTGGGAAGTGTTCCAAAAATGTGTCAATGCCATATTTCAGCCAACTGCTGTCTTTGGGGATCAGTGGTACAGTGGATACCAAAGAGGATAGTAAAGATTATAGTCAGGATGGTTGCAGCACTGCAGCAAGGAATGAAACTCATTCAGACAACCAAATTAATGAGCAGAACAGGGAGCTAAAGGTGGATGATACTCGTACCCAGTCTGATGGTAAAGATGAATCTGTTAGGAGCAATGGATGGCAGGAACAGCCCCATGCATACCATCCACAACCTTCAGTGGCCATTTCTGAGAATATGAAGGAGAACTCTGATAAATTAAATGAAGGTAATCGGATTGGGGGAAACTCTGCAGATAAAGGGAATCCTGGTTTGAACAGGACTTCTGATGGTCAGAGTAACAGTGGGCAGAGTTACCAGAAGCAATCATACAGTGAAGATAATTCAGGGCAATCTTCTGAACAGAACTGGAGAGGCCCTCGTGTTAACAATTCTTCCAATTGTGCGGTTACCACATCAGCTGAAGTTTTGGTTACAAAGACATCACCACCTAAGCTAGGATTTGATTTACATAGTTCTCCATCCCATCCTGACCAGAACTGGATAGGCCCTCATGTAAATACTTCTTCTGATTGTGTGGTTCCCACATCAGCTGAAGTTTCTGTGCCAAAGACATCACCACCTAAGCTAGGATTTGATTTGCATATTCCTCCATCACAGCTTGAACAAGACTGGAGAGATCCTCATGTAAATACTAATTCCAATTGTGTGGTTACTACATCAGCTGAAGTTTCTGTGACAAAGATATCACCACTTAAGCTAGGATTTGATTTGCATAGTCCCCCATCCCATCCTTCGTGGCAAGCATTCATCGGTGAGACCACTGACTTTAGCTCATTAGTTGACGTTGATGAATCAGTCTCAGATCTGTTAGCTGAGGTGGAAGCAATGGAATCACTTGGTGGTGGTGGTGGTGGCGGTGGCGGCGGCGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGTGAGGAATTGACTGACAGTTCTAAAAATGATTGCCTCAGTTTTGCAGATGGGCTTAGCCCAGTACTTGATGCAGGTAAAGGTGATGCACTTAGCTCCACTGGTGATTTGCACTTGCAATCTCAGTCAACAGCAGCAGAGGAACCATTGCGGCAAGCAGATATACATCATCATCACCATCATCATCATCATCATCAGAGAGTATCTGGGGAACATTCTTCAAGGAGTTCTGAAGTTAAGGTGGGTACAAAGAGCATTAGTGTTTCAGGTTATCAATGGGAATCAGGCTCAGAAAATTCAACCATTGGTCCATCGACTGCAACCTGGAGCATTGCTACAGACCCCACTTGGAGAGTCGGGTCAGAGAATACAAACTTGGGATGGAGTGGAATGGATAGAGGAAATGTGAACATTGGCTGGGGTGTGGGGCAGTCAGCAGTGCAGGAGAACAGGAGCACAAGTTCATACACTCCTACAGTTTCTCCAAGCTTTGGTGGAAGTCAAGCAAGATATGGCAGCGATCGACCTTCTGTGCCTAGAGATCGGGGTTTTCATGGTCATGGTAGGGAATCAGCTGTTGCTAGAGGCAGAACTGCGTGGAACCGGCAAACTTCATTTGGTGTTGGAAACGGAGGCTCACACAGGCCTCTGCCCAAAGGGCAACGTGTCTGTAAATTTTATGAAAGTGGGCGCTGTAAGAAGGGGGCATCCTGTGATTACTTTCACCCATGA 4233 0.447 MEQQQLQQSGAATAGAAPPVEGARDLGDSQLVGVPAAVDGDVVMAERDGSGSVPNLEVAVGDGGATAVKRKRGRPAKGAPRASATGAAARLQQKKEEEEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSFCQKASQFLCYTCTYSVCKSCTKYADFVCVRENKGLCGICMRTIMLIENNGQGNSEKCEVDFDDKTSWEYLFKVYWMFLKGKISLTFDELLRAKNPWTGVSPLGGKVECPREIYNTKDDKGSGSENSCIDIESNNLKNKKSRRQPMLHSNGVGSDMITSAGDNCVPLPECSNWASKELLEFVAHMKSGDTSRLSQFDVQGLLLEYVKKNNLRDPQQKCQIVCDHRLLKLFGRARVGHIEMLKLLEPHFLTKENGPAEDTLRAGVTNTVASEGEAKDNCNKQLMLVDDKECKTDKKDDVHLPQNNPDVYAAINAHNINLIYLRRSLLENLTEDAESVRDKVVGSFVRIRITSSDKKQEMYRLVQVVGTSKAAEPYKIGTRTTDMMLEILNLNRKEAISIDEISNQEFSEDECKRLRQSIKYGLSNRLTVGEIMDKALTFQAMRVNDLLEAEILRLTHLRDRASEKGHRKELRECVEKLQLLNTPEERQRRMREIPEVHSDPNLDLMFESDEDAGESDERKQDGNIWSKYPGFDRKEKEPTLPKSCDSVLNDDGCRTQDFSAAAREQNGNACVTKSQIKPNETVFDDDPNVVVKSEPSGVALDISLSPQSVGVEQSFNDFVNDKSWHYQDPTGKVQGPFSMLQLFKWNASGGFPPNLRIWRINEKQDSSILLTDALSGKCSKNVSMPYFSQLLSLGISGTVDTKEDSKDYSQDGCSTAARNETHSDNQINEQNRELKVDDTRTQSDGKDESVRSNGWQEQPHAYHPQPSVAISENMKENSDKLNEGNRIGGNSADKGNPGLNRTSDGQSNSGQSYQKQSYSEDNSGQSSEQNWRGPRVNNSSNCAVTTSAEVLVTKTSPPKLGFDLHSSPSHPDQNWIGPHVNTSSDCVVPTSAEVSVPKTSPPKLGFDLHIPPSQLEQDWRDPHVNTNSNCVVTTSAEVSVTKISPLKLGFDLHSPPSHPSWQAFIGETTDFSSLVDVDESVSDLLAEVEAMESLGGGGGGGGGGGGLESPTSIMKCGEELTDSSKNDCLSFADGLSPVLDAGKGDALSSTGDLHLQSQSTAAEEPLRQADIHHHHHHHHHHQRVSGEHSSRSSEVKVGTKSISVSGYQWESGSENSTIGPSTATWSIATDPTWRVGSENTNLGWSGMDRGNVNIGWGVGQSAVQENRSTSSYTPTVSPSFGGSQARYGSDRPSVPRDRGFHGHGRESAVARGRTAWNRQTSFGVGNGGSHRPLPKGQRVCKFYESGRCKKGASCDYFHP 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01112 1410 SMART gyf_5 773 828 IPR003169 GO:0005515
Arst5g01112 1410 FunFam Zinc finger CCCH domain-containing protein 19 462 591 - -
Arst5g01112 1410 Gene3D - 462 591 IPR036128 GO:0003677
Arst5g01112 1410 SUPERFAMILY Plus3-like 462 589 IPR036128 GO:0003677
Arst5g01112 1410 MobiDBLite consensus disorder prediction 861 875 - -
Arst5g01112 1410 ProSiteProfiles Plus3 domain profile. 461 594 IPR004343 GO:0003677
Arst5g01112 1410 Pfam Plus-3 domain 466 569 IPR004343 GO:0003677
Arst5g01112 1410 Pfam SWIB/MDM2 domain 326 399 IPR003121 -
Arst5g01112 1410 MobiDBLite consensus disorder prediction 63 94 - -
Arst5g01112 1410 CDD SWIB-MDM2_like 324 399 - -
Arst5g01112 1410 ProSiteProfiles Zinc finger PHD-type profile. 101 167 IPR019787 -
Arst5g01112 1410 ProSiteProfiles Zinc finger C3H1-type profile. 1385 1410 IPR000571 GO:0046872
Arst5g01112 1410 SMART swib_2 326 404 IPR019835 -
Arst5g01112 1410 SUPERFAMILY FYVE/PHD zinc finger 97 158 IPR011011 -
Arst5g01112 1410 MobiDBLite consensus disorder prediction 1194 1252 - -
Arst5g01112 1410 MobiDBLite consensus disorder prediction 1 28 - -
Arst5g01112 1410 FunFam Zinc finger CCCH domain-containing protein 19 92 193 - -
Arst5g01112 1410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 193 IPR013083 -
Arst5g01112 1410 MobiDBLite consensus disorder prediction 1316 1386 - -
Arst5g01112 1410 Coils Coil 595 615 - -
Arst5g01112 1410 CDD GYF 772 827 IPR003169 GO:0005515
Arst5g01112 1410 ProSiteProfiles SWIB/MDM2 domain profile. 318 401 IPR003121 -
Arst5g01112 1410 MobiDBLite consensus disorder prediction 1342 1359 - -
Arst5g01112 1410 Coils Coil 81 101 - -
Arst5g01112 1410 CDD PHD5_NSD 103 148 - -
Arst5g01112 1410 MobiDBLite consensus disorder prediction 1316 1337 - -
Arst5g01112 1410 SMART PHD_3 103 149 IPR001965 -
Arst5g01112 1410 MobiDBLite consensus disorder prediction 946 992 - -
Arst5g01112 1410 Gene3D - 774 830 IPR035445 -
Arst5g01112 1410 ProSiteProfiles GYF domain profile. 772 826 IPR003169 GO:0005515
Arst5g01112 1410 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 41 1410 - -
Arst5g01112 1410 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 41 1410 - -
Arst5g01112 1410 MobiDBLite consensus disorder prediction 660 694 - -
Arst5g01112 1410 MobiDBLite consensus disorder prediction 876 904 - -
Arst5g01112 1410 SUPERFAMILY SWIB/MDM2 domain 324 401 IPR036885 -
Arst5g01112 1410 MobiDBLite consensus disorder prediction 663 692 - -
Arst5g01112 1410 MobiDBLite consensus disorder prediction 1222 1236 - -
Arst5g01112 1410 Gene3D SWIB/MDM2 domain 318 407 IPR036885 -
Arst5g01112 1410 MobiDBLite consensus disorder prediction 851 992 - -
Arst5g01112 1410 MobiDBLite consensus disorder prediction 1201 1215 - -
Arst5g01112 1410 SUPERFAMILY CCCH zinc finger 1385 1409 IPR036855 GO:0046872
Arst5g01112 1410 SUPERFAMILY GYF domain 770 825 IPR035445 -
Arst5g01112 1410 SMART rtf1 461 571 IPR004343 GO:0003677
Arst5g01112 1410 ProSitePatterns Zinc finger PHD-type signature. 104 164 IPR019786 -
Arst5g01112 1410 Pfam GYF domain 775 815 IPR003169 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01112 Arst-Chr5 11241284 11248695 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01112 101 181 PHD Transcription Factor Family AT4G14920 35.802 1.53e-07 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Arst5g01112 Plus-3 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01112 - - gmx:100801151 1888.23