Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01102 ATGCTTTACCAAACTCCCCATCCTCTTCTCTTTCAATTTCATCCCTTCCCTTCTTCGTCATCGACTCTACCTCTATCTTCGTATCATCTTCTCATTAAGGTGGAAGAAAGAGAAAGGGAAATGGAGTGCATGGTGGAGGGAGCGTTGAAGACGAGTTTTAGAAAAGAGATGGGGATGGGTATGAAATATACCACATCCCCGCAGAGGTCCTTCATGGAAGAACTTCAAAATGGCGCCCCTTCCGACGACTTCTTCGTTGACCAACTCCTTGACTTCTCCCAAGTAGACCAACAAGAAGAGCAACAAGAAGAAGAACAAGAGCATAAGAAAGTTGGAGAAGACTCTGCTTGCGTGTCACTCTCGCCGCAACAGACCAACGACGTTGAAGAGACCTTTCCCTCTCTCCCCACCACAGACCTCAACCTTCCGGATGATGTGGCAGACTTGGAGTGGCTCTCTCATTTCGTCGAGGATTCCTTCTCTCAATTCTCTCCTCCCATCGTCCCCGCCGCCGTACCAACCTCAACCCCACCTGCTCCGCCTCAACCTTGTTTCAACACCCCCGTTCCTGCCAAGGCGCGTAGCAAGCGAACCCGAACCGGTGTCAGGGTTTGGCCACTCGCCTCACCTTCCTTCGCCACCACTGACTCCTCCTCAACCACTGCCACCGCTACCTCCTCCACCTCTTCTTCCCCTTCCAGCCCCTTGCTAATTTACGCCACAAACCTGTCCCAGACCATGGACCAGGTTAGCTCCGACGCTCCGCCGAAGAAGCCCAAGAAGAAGGCCTCTCCGGAAGGCGGATTTCCGGCACAGGCACCGCGCCGCTGCAGCCATTGCGGCGTCCAGAAGACCCCGCAGTGGAGAACGGGACCCCTCGGGGCGAAAACGCTCTGCAACGCGTGCGGGGTTCGGTACAAATCGGGTCGGCTCTTACCCGAATATAGACCCGCTTGCAGCCCAACGTTCTCCAGCGAGTTGCACTCCAACCACCACCGGAAAGTTCTGGAGATGCGGCGGAAGAAGGAGACTATAGGTGGTGGGGTTGATACCTCCGGTTTGGCCCCTCCGGTTGTTCCCAGTTTTTGA 1089 0.551 MLYQTPHPLLFQFHPFPSSSSTLPLSSYHLLIKVEEREREMECMVEGALKTSFRKEMGMGMKYTTSPQRSFMEELQNGAPSDDFFVDQLLDFSQVDQQEEQQEEEQEHKKVGEDSACVSLSPQQTNDVEETFPSLPTTDLNLPDDVADLEWLSHFVEDSFSQFSPPIVPAAVPTSTPPAPPQPCFNTPVPAKARSKRTRTGVRVWPLASPSFATTDSSSTTATATSSTSSSPSSPLLIYATNLSQTMDQVSSDAPPKKPKKKASPEGGFPAQAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETIGGGVDTSGLAPPVVPSF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01102 362 Gene3D - 270 344 IPR013088 GO:0006355|GO:0008270
Arst5g01102 362 MobiDBLite consensus disorder prediction 210 252 - -
Arst5g01102 362 SMART GATA_3 271 325 IPR000679 GO:0006355|GO:0043565
Arst5g01102 362 Pfam GATA zinc finger 277 311 IPR000679 GO:0006355|GO:0043565
Arst5g01102 362 PANTHER GATA TRANSCRIPTION FACTOR 77 343 - -
Arst5g01102 362 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 271 333 - -
Arst5g01102 362 FunFam GATA transcription factor 269 351 - -
Arst5g01102 362 ProSitePatterns GATA-type zinc finger domain. 277 302 IPR000679 GO:0006355|GO:0043565
Arst5g01102 362 ProSiteProfiles GATA-type zinc finger domain profile. 271 307 IPR000679 GO:0006355|GO:0043565
Arst5g01102 362 MobiDBLite consensus disorder prediction 187 277 - -
Arst5g01102 362 CDD ZnF_GATA 276 324 IPR000679 GO:0006355|GO:0043565
Arst5g01102 362 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01102 Arst-Chr5 11016497 11017897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01102 44 362 C2C2-Gata Transcription Factor Family AT5G66320 44.932 2.01e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Arst5g01102 GATA 5.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01102 - - aprc:113869559 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00712 3 5064688 5066404 Arst5g01102 5 11016497 11017897 ECH
Arst5g01102 5 11016497 11017897 Arst5g01102 5 11016497 11017897 ECH
Arst5g01102 5 11016497 11017897 Arst3g00712 3 5064688 5066404 PCT