Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01085 ATGGCAGGTTTGTTCTCACTAGGCGGTGGTAGTAGTAGTAGTAGTGGTAGAGGAGGGAGAGGGAACACAAACCAACAACAACAACAACACGACCAACACCAACAACACGCGGAAATTCCTCCCTCCGACACCTTTTACTGGTACAAGAATGAAGACGTTTCCTCGTACCGAGGTGGCTTGGAGCTGTGGAACCATCATCATCATCATCACCAACCAGAACACGACCTCATACCTCAAGCAAGGCCTCTCTTCCACCAAGATCTTTACAGCTCCGCGGCTGCTCTAGGAGTGGGTCCAACCACCGTGTCCGACGATCAGTCACCCTCGAGATCGGCCTTCCTGGTGACGGCGTCGGCCGTGGGGAGCGGAGCAGCAAGCGGAGCAGGAAGTGGAGCAGGTGGGATTAGCTGCCAGGACTGCGGGAACCAGGCGAAGAAGGATTGCCCTCACATGCGGTGCAGGACATGCTGCAAGAGCCGTGGCTTCGATTGCCAAACCCATGTCAAGAGCACTTGGGTTCCCGCTTCCAAGCGCCGCGAGAGGCAGCAGCAACTCGCCTCTATCCAACAACAACAGCTTCTTGCTGCTGATGTTCCCAAGCGCCAAAGAGATCATGCCTCTAGTACTCGTTTACCCACAAACCCTTCTTCTTCAGCCTCGGCTTCAGGGATGGAGAATTTTCCTGCAGTAGTGAGCTCTCCAGCTGAATTCAGATGCGTACGTGTGAGTGGAATCGACGACACAGAAGACGAGTATGCATATCAAACGGCAGTCAACATTGGAGGACACGTCTTCAAAGGGATCCTCTATGACCAGGGTCCAGATCACGCCACTACCACCACCACCAACAGCAGCAGCTACGTCGCCGGAGACACCTCCTCCACCGGTGCTGCTGCTCATCACCCTAATCTCAACCTCATTGCTCCCAACACCAACACCACAACTTCAGCCCTCGTCTCCGCTGCACACACAACGCAGCAGCTCGTAGATCCTTCATCCATGTATCCACCTCCTCTCAGCACCTTCATGGCTGGTAGTAGCGGTACGCAATTCTTCCCTCATCCAAGATCTTGA 1074 0.5447 MAGLFSLGGGSSSSSGRGGRGNTNQQQQQHDQHQQHAEIPPSDTFYWYKNEDVSSYRGGLELWNHHHHHHQPEHDLIPQARPLFHQDLYSSAAALGVGPTTVSDDQSPSRSAFLVTASAVGSGAASGAGSGAGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLASIQQQQLLAADVPKRQRDHASSTRLPTNPSSSASASGMENFPAVVSSPAEFRCVRVSGIDDTEDEYAYQTAVNIGGHVFKGILYDQGPDHATTTTTNSSSYVAGDTSSTGAAAHHPNLNLIAPNTNTTTSALVSAAHTTQQLVDPSSMYPPPLSTFMAGSSGTQFFPHPRS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01085 357 MobiDBLite consensus disorder prediction 1 42 - -
Arst5g01085 357 MobiDBLite consensus disorder prediction 7 39 - -
Arst5g01085 357 NCBIfam putative zinc finger domain, LRP1 type 136 178 IPR006510 -
Arst5g01085 357 MobiDBLite consensus disorder prediction 175 225 - -
Arst5g01085 357 Pfam Domain of unknown function (DUF702) 134 275 - -
Arst5g01085 357 NCBIfam LRP1 C-terminal domain 227 274 IPR006511 -
Arst5g01085 357 MobiDBLite consensus disorder prediction 175 196 - -
Arst5g01085 357 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 15 340 IPR007818 GO:0003700|GO:0006355
Arst5g01085 357 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01085 Arst-Chr5 10786353 10788546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01085 1 345 C2H2 Transcription Factor Family AT5G66350 42.896 1.54e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Arst5g01085 DUF702 2e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01085 - - ahf:112720334 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g00141 8 1565768 1568288 Arst5g01085 5 10786353 10788546 ECH
Arst3g00694 3 4891656 4893121 Arst5g01085 5 10786353 10788546 ECH
Arst5g01085 5 10786353 10788546 Arst5g01085 5 10786353 10788546 ECH