Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01029 ATGAATGATCTGATGACGAAATCGTTCTTAAGTTATGTTGAACTGAAGAAACAGGTCATGAAGGACCTTGAAAATGAACGTGATATTGAAGCAGGGCAACTCAACCCCACACAACTAGAAGACCCTAATCTCACTCAGTTCTTCCAAGAAGTGGATGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTTGATCTTCAGCAACTGAATGAAGAAGCAAAGTCCACACACAGTGCAAAAGTCCTCCGTGGACTAAGAGACCGCATGGAATCTGACATGGTTGCGGTGCTTCGCAAGGTCAAGATCATCAAGGCAAGGCTTGAGGTCCTGGATCAATCCAACATAGCCAATAGAACTTTATCAGAGTCCTATAAAGAGGGTACACCAATTGATAGGACAAGGAGTTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGAGTTTCAGTCCTTGAGGGACAAGATACTGTCTGATTACAAGGAAGATTTGAAGAGAAGGTACTACAGCGCGACCGGCGAGGTTCCGAGTGAGGAGGTCATGGACAAGATGATCTCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACAGATGCTGACATGGGAAATCAGGTTAGACATGAGGCTGTGATGGATATTCAGAGGAGTTTGAACAAGCTTCACCAAGTGTTTCTTGATATGGCTATTCTGGTTGAGACACAAGGGGAGAAATTGGACAATATTGAAGATAATATGGCCAGTGCTGGTAACTACATCCATGGTGGAACTAATAGTCTTTACTATGCCAATCAGATGAAGAAGAAGAACCATAAATGGTGGTGCTGGGTTTGTGCTGTTGGGTTGATTGTGCTGTTGGTGTGCTTCATAGCAATGTTGACTTCTTGA 903 0.433 MNDLMTKSFLSYVELKKQVMKDLENERDIEAGQLNPTQLEDPNLTQFFQEVDAIKVEMEEITNLLFDLQQLNEEAKSTHSAKVLRGLRDRMESDMVAVLRKVKIIKARLEVLDQSNIANRTLSESYKEGTPIDRTRSSVTNGLRVKLRDMMNEFQSLRDKILSDYKEDLKRRYYSATGEVPSEEVMDKMISGSLKVEFLAGKTDADMGNQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKLDNIEDNMASAGNYIHGGTNSLYYANQMKKKNHKWWCWVCAVGLIVLLVCFIAMLTS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01029 300 CDD SynN 47 194 IPR006011 GO:0016020
Arst5g01029 300 SUPERFAMILY t-snare proteins 41 261 IPR010989 GO:0016020|GO:0016192
Arst5g01029 300 Coils Coil 54 78 - -
Arst5g01029 300 SMART SynN_4 39 166 IPR006011 GO:0016020
Arst5g01029 300 FunFam Syntaxin 132 201 299 - -
Arst5g01029 300 Pfam SNARE domain 242 292 IPR000727 -
Arst5g01029 300 Pfam Syntaxin 46 241 IPR006011 GO:0016020
Arst5g01029 300 CDD SNARE_syntaxin1-like 210 265 - -
Arst5g01029 300 Gene3D - 203 299 - -
Arst5g01029 300 PANTHER SYNTAXIN 47 289 IPR045242 -
Arst5g01029 300 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 41 172 - -
Arst5g01029 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Arst5g01029 300 SMART tSNARE_6 199 268 IPR000727 -
Arst5g01029 300 Gene3D - 40 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01029 Arst-Chr5 10133290 10134846 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01029 1 300 SNARE and Associated Proteins AT2G18260 58.632 2.24e-130 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01029 K08486 - gmx:112997615 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01029 5 10133290 10134846 Arst5g01029 5 10133290 10134846 ECH