Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01013 ATGGAAAGAAGAGGGGAAGAGGATAAGGAATTAGAGATGGCAACAATAACAGCAACAGCAACAACAACAACCACTTTGGGTAGTTATAGTGTTGTTGTTGTTCCAAACAACAACAATAACAGGGATTCTTCTTCTTCAACTTCTTCAAAGTTGTCTTCTCCAACTGTGGTTGGAGCTTCTGAAACAACTCACCAACCATCTCAAACTCACTCATTAGTCTTCCACCACCATGATCCTCCAAACCACAACCACCACCATCAACATCATCTCTATCCTCATCTTCAGCCACCCAACCAACAATCTCTAAGACCAACCTCAGATCCAGATCTAACCTCGTCTCCTATTGCCACAACAGCACCGCAGCCGCCGCCACCACCACCACACGCAGCTGCAACAACCACCACAGCATTAGCAAGGTACAGAGAATGTCTGAGAAACCACGCAGCCAGCATGGGGAGCCATGTGGTGGATGGTTGTGGAGAGTTCATGCCAAGCGGAGAAGAAGGCACCCCGGAATCACTCCGGTGCGCCGCCTGTGAGTGCCACCGTAACTTCCACCGTAGAGAGGTTGAAGGCTCCGCTCCTCAACAGCATCACAACTATTACCCCAACAACAACAACAACAAGCACAACGGTCACAGCACTCATCATCTTCTTCAGTTCCACACACCACCACCATCTTCATCCCTTCATCATCAACGATTCTCTCATGCTATTGCTGCTGCTGCTCCACCATCGGTTCAGCCGGTGATGATGGCGTTCGGAGGAGGAGGAGGAGGAGGAGCGGCGGAATCCTCTAGCGAAGATCTGAACATGTTCCATCATCAGTCAAACGCATTAGGAGGGCAATTCTCAGTGCAGCAAGCATCAGCGTCAAAGAAGAGGTTCAGGACAAAGTTCACACAGCAGCAGAAAGATAGAATGATGGAGTTCGCTGAGAAGCTTGGGTGGAAGATTCAGAAACACGATGAGCAAGAAGTGCAGCAGTTTTGTTCTCAAGTTGGTGTGAAGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAGCAAGCTATCAAGAAACAACAGCAGCATCACACGTAA 1083 0.4866 MERRGEEDKELEMATITATATTTTTLGSYSVVVVPNNNNNRDSSSSTSSKLSSPTVVGASETTHQPSQTHSLVFHHHDPPNHNHHHQHHLYPHLQPPNQQSLRPTSDPDLTSSPIATTAPQPPPPPPHAAATTTTALARYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPESLRCAACECHRNFHRREVEGSAPQQHHNYYPNNNNNKHNGHSTHHLLQFHTPPPSSSLHHQRFSHAIAAAAPPSVQPVMMAFGGGGGGGAAESSSEDLNMFHHQSNALGGQFSVQQASASKKRFRTKFTQQQKDRMMEFAEKLGWKIQKHDEQEVQQFCSQVGVKRQVFKVWMHNNKQAIKKQQQHHT 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01013 360 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 118 350 - -
Arst5g01013 360 Gene3D - 282 354 - -
Arst5g01013 360 Pfam ZF-HD protein dimerisation region 139 190 IPR006456 -
Arst5g01013 360 MobiDBLite consensus disorder prediction 33 74 - -
Arst5g01013 360 MobiDBLite consensus disorder prediction 197 211 - -
Arst5g01013 360 MobiDBLite consensus disorder prediction 93 116 - -
Arst5g01013 360 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 139 190 IPR006456 -
Arst5g01013 360 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 140 189 IPR006456 -
Arst5g01013 360 NCBIfam homeobox domain, ZF-HD class 293 350 IPR006455 -
Arst5g01013 360 MobiDBLite consensus disorder prediction 192 211 - -
Arst5g01013 360 MobiDBLite consensus disorder prediction 33 132 - -
Arst5g01013 360 SUPERFAMILY Homeodomain-like 287 354 IPR009057 -
Arst5g01013 360 FunFam Zinc-finger homeodomain protein 2 282 354 - -
Arst5g01013 360 ProSiteProfiles 'Homeobox' domain profile. 291 355 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01013 Arst-Chr5 9926933 9929432 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01013 112 355 ZF-HD Transcription Factor Family AT2G18350 50.000 2.51e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Arst5g01013 ZF-HD_dimer 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01013 - - gmx:100776691 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01013 5 9926933 9929432 Arst5g01013 5 9926933 9929432 ECH