Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00996 ATGGCGCCCAAGGATGAAGTGATGGAAGAAGATCCTGTTGAGTCTCCCACTTCCGTCCTTGAAGACGAGGATGCTTGTGCTGTGAAAGTTGAAGTTGAGTCTGATGAAGTGCAGTGCCAGGAGGCACCTGAGCTTACTGATACTCAGTTTAACAAATTGGATGAGCTTTTAACTCAAACAAAGCTCTATTCCGAGTTTCTGCTGGAGAAAATGGACGACATCACACTTAATGGGGGCGAGCAAGAGAATGAGCCCGAAGAGAAGAAAGTGCGTGGCCGGGCTTCTAAAAGGAAAGCAGCTTCACAGTGCAATACTACGAGGGCCAAAAGGGCAGTTGCTGCTATGCTTGCAAGATCAAAAGAAAGTGTTAAGATAGAAGATATTAACATGACTGAGGAGGAAAGAACTGAGAAAGAACAGAAGGAGCTTATGCCTTTACTCACGGGCGGAAAATTGAAGTCTTATCAGCTTAAAGGTGTAAAGTGGTTGATTTCACTCTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACCATTCAAACAATTGGGTTTCTTTCACATCTAATAGGGAAAGGTCTCCATGGGCCATACATGATAATTGCTCCTCTAAGCACCCTCTCAAATTGGAAAAATGAGTTTTCTAGGTTTGCACCATCAGTTCCTGCAATTATCTACCATGGCAACAGGCAAGAGAGAGATGTAATCCGACGGAAACATATGCCTGTAACCATTGGCCCCAAATTCCCCATATTAATAACTTCATATGAGGTTGCTTTAAATGATGCTAAAAAACATTTAAGGGTTTACCCTTGGAAGTATCTTGTAGTTGATGAGGGACACAGACTCAAAAATTCAAAGTGTAAATTAGTGAAGGAGTTGAAATGGATTAATGCACAGAACAAGCTACTTTTATCAGGGACTCCTCTTCAGAATGACTTGGCAGAGCTATGGTCCTTGTTGAACTTCATTTTACCGGATATTTTTGCTTCGCTTGAAGAATTTAAGTCATGGTTTAATCTATCAGGAAAGTGCAACAATGGAGCAACCAAGGAAGAATTAGAAGAAACAAGAAGAGGCCAAGTGGTGACTAAGCTTCATGCCATACTTCGACCCTTTCTCCTGCGTAGAATGAAGTCTGATGTTGAGATTTCATTGCCAAGAAAGAAGGAGATCATTATCTATGCAAATATGACTGAGCATCAGAAGAAATTGCAGGATCATTTAGTCAACAAGACGTTGGAGAACTATTTTGCGGACATGAAGTCAATGGGGCGTGGAATAAAGACGCTTAATAATTTGGTTATTCAACTTAGGAAAGTCTGTAACCATCCTGACCTCTTAGAGTCTGCCTTTGATGGTTCATGGCTTTATCCTCCTGTGAATGAGATAGTTGAACAATGTGGAAAATTTCGTTTGCTTGAACGGCTGTTGGAAAGGTTATTTGCAAGGAAACACAAAGTTTTGATATTCAGTCAGTGGACCAAAGTGTTGGACATACTGGATTACTATTTGAGTGAGAAGGGCTTTGAAGTTTGTAGGATTGATGGTAGTGTGAAATTGGATGAAAGGAAACGACAGATCCATGAATTCAATGATGAAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGACTAGGAATTAACCTTACTGCAGCTGACACATGCATTCTTTATGACAGTGATTGGAATCCTCAGGTAGACTTGCAGGCCATGGATAGGTGTCACAGAATTGGTCAAACAAAACCAGTTCATGTTTACAGGCTCTCGACTGCTCAATCTGTAGAGGGTCGCATGCTGAAAAGAGCTTTTAGCAAGTTGAAACTTGAACATGTGGTGATTGCAAAAGGACATTTTCATCAAGATCGCACAATGCTCAAAGTGGATGAAATGGAGGAACAAGATATTATGGCATTGCTTCGGGACGAGGATGCAGCTGAAGATAAATTGATACAAACAGATATTAGTGATGAGGATTTGGATAAGCTGTTGGATCGCAGTGATCTTATTGCTCAAGATCCAAATGATGACGACAAGGAACTCAAAGTTCCATGCGATGCATTTCCTCTTAAAGGACCTGGGTGGGAGGTTGTAATTCCGACGGCAACTGGGGGCATGCTTTCTACTCTTAACAGTTAA 2166 0.4132 MAPKDEVMEEDPVESPTSVLEDEDACAVKVEVESDEVQCQEAPELTDTQFNKLDELLTQTKLYSEFLLEKMDDITLNGGEQENEPEEKKVRGRASKRKAASQCNTTRAKRAVAAMLARSKESVKIEDINMTEEERTEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLIGKGLHGPYMIIAPLSTLSNWKNEFSRFAPSVPAIIYHGNRQERDVIRRKHMPVTIGPKFPILITSYEVALNDAKKHLRVYPWKYLVVDEGHRLKNSKCKLVKELKWINAQNKLLLSGTPLQNDLAELWSLLNFILPDIFASLEEFKSWFNLSGKCNNGATKEELEETRRGQVVTKLHAILRPFLLRRMKSDVEISLPRKKEIIIYANMTEHQKKLQDHLVNKTLENYFADMKSMGRGIKTLNNLVIQLRKVCNHPDLLESAFDGSWLYPPVNEIVEQCGKFRLLERLLERLFARKHKVLIFSQWTKVLDILDYYLSEKGFEVCRIDGSVKLDERKRQIHEFNDENSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQVDLQAMDRCHRIGQTKPVHVYRLSTAQSVEGRMLKRAFSKLKLEHVVIAKGHFHQDRTMLKVDEMEEQDIMALLRDEDAAEDKLIQTDISDEDLDKLLDRSDLIAQDPNDDDKELKVPCDAFPLKGPGWEVVIPTATGGMLSTLNS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00996 721 MobiDBLite consensus disorder prediction 77 93 - -
Arst5g00996 721 Gene3D - 388 691 IPR027417 -
Arst5g00996 721 SMART ultradead3 148 343 IPR014001 -
Arst5g00996 721 PANTHER SNF2/RAD54 HELICASE FAMILY 41 670 - -
Arst5g00996 721 Pfam SNF2-related domain 155 452 IPR000330 GO:0005524|GO:0140658
Arst5g00996 721 FunFam ATP-dependent DNA helicase DDM1 146 391 - -
Arst5g00996 721 CDD SF2_C_SNF 464 598 - -
Arst5g00996 721 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 478 641 IPR001650 -
Arst5g00996 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 382 IPR027417 -
Arst5g00996 721 MobiDBLite consensus disorder prediction 77 102 - -
Arst5g00996 721 SMART helicmild6 504 588 IPR001650 -
Arst5g00996 721 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 332 IPR014001 -
Arst5g00996 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 678 IPR027417 -
Arst5g00996 721 MobiDBLite consensus disorder prediction 1 23 - -
Arst5g00996 721 FunFam Chromatin complex subunit A 106 392 619 - -
Arst5g00996 721 Pfam Helicase conserved C-terminal domain 478 588 IPR001650 -
Arst5g00996 721 Gene3D - 117 381 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00996 Arst-Chr5 9602688 9607702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00996 120 609 RAD5 or RAD16-like Gene Family AT1G02670 27.191 9.54e-42 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst5g00996 SNF2_N 9.5e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00996 K19001 - gmx:100777687 1131.32