Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00976 ATGCCGGTTGATTTAGACAATGTTTCAACAGCTTCAGGGGAAGCTAGTGTTTCTTCCTCTGGCAATCAGACAGTACCTTCAAAATCAGCCACCAAGAAAAAGCGTAATTCCTTAAAATATATGTATAACCTTTCACTTACAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTATTGGCGACGAACAGATTCGTGTGCGAAATCTGCAACAAGGGTTTCCAGAGGGATCAGAACCTTCAGCTCCATCGAAGGGGTCACAACCTTCCATGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAAGAAGAGGGTGTACGTGTGCCCCGAGCCAACGTGCGTTCACCACGATCCTTCACGCGCGCTCGGGGATCTCACCGGAATCAAGAAGCACTTCTGCAGAAAGCACGGGGAGAAGAAGTGGAAATGCGACAAGTGCTCTAAGAAATACGCTGTTCAATCAGATTGGAAGGCTCACTCTAAGATTTGCGGCACTAGAGAGTACAAATGCGATTGTGGCACTTTGTTCTCAAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTGGCGGAGGAAAGTGCGAGATCTCAGACTCATTCACAAACTACTCAGTCTCAGATTGGTGTTAAGGTTAGTTCTGAATCAGATTCTAAGGCTGTTAACGCTGAATCTTCGTCGCCTCAGCCGACACCTCCACCTCCTGCTACTACTCCTGCTCCTGCTCCACCACCGCCGCCTCCTCCGGTTCAGCCGGAAGCTCCGCCACTGCCGGCCACTACTACTACTACCACCACCACCCAGCCAAACAGTGTTGTTGTGCCACTGGTTTTGCAGACTCAGAATCCAGAGTTGCCAGAAAATTCCCCACAAATCATAGAAGAGCCACAAGCTAACACTGCTCTGAATGGGAGCTGTAGCAGCAGCACTAGCTCAACAAGCAATGGTGGTACTAGCAGCAGTGTATTTGCAAGTTTGTTCGCTTCATCAACTGCATCGGGTAACCTGCAATCCCAAACACCACCTGCATTTACCGACCTCGTTAGGGCCATGGGGCCCCCTGATCATCCAACAGATCTCCCAGGGCCATCCTCCTCGGAGCCCATTTCTTTGTGCCTTGCCACTAATCATGGCTCGTCAATTTTTGGAACAGGAGGGCAGGAGCGCCGCCAATATGCACCACCGCCACAGCCAACCATGTCTGCCACTGCTTTGCTGCAAAAAGCAGCTCAAATGGGTGCGGCTGCAACCAATGCCTCGCTGCTTCGTGGTTTAGGTATAGTGTCCTCTTCTGCTTCGTCTTCACCAGCTCAGCAAGATGGCTTGCAATGGGGTCAGCAGCCGGCTGAACCAGAGAGTGCCTCGGTTCCGGCGGGGCTTGGACTTGGGCTGTCTTTTGACAGTGGCTCTGGACTAAAGGAATTAATGATGGGGACTCCTTCCATGTTTGGTCCAAAGCATACCACCCTCGATTTTCTAGGATTGGGGATGGCTGCTGGGGGAACTCCTGGTGGAGGCTTGTCGGCACTCATCACATCTATTGGTGGTGGTTTGGATGTTAGTGCTGCAGCAGCAGCATCTTTTGGAAACGGAGAGTTTTCTGGCAAAGACATTGGGCGGAGCACATGA 1641 0.5149 MPVDLDNVSTASGEASVSSSGNQTVPSKSATKKKRNSLKYMYNLSLTDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQTHSQTTQSQIGVKVSSESDSKAVNAESSSPQPTPPPPATTPAPAPPPPPPPVQPEAPPLPATTTTTTTTQPNSVVVPLVLQTQNPELPENSPQIIEEPQANTALNGSCSSSTSSTSNGGTSSSVFASLFASSTASGNLQSQTPPAFTDLVRAMGPPDHPTDLPGPSSSEPISLCLATNHGSSIFGTGGQERRQYAPPPQPTMSATALLQKAAQMGAAATNASLLRGLGIVSSSASSSPAQQDGLQWGQQPAEPESASVPAGLGLGLSFDSGSGLKELMMGTPSMFGPKHTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVSAAAAASFGNGEFSGKDIGRST 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00976 546 SMART c2h2final6 143 163 IPR013087 -
Arst5g00976 546 SMART c2h2final6 108 138 IPR013087 -
Arst5g00976 546 SMART c2h2final6 67 89 IPR013087 -
Arst5g00976 546 MobiDBLite consensus disorder prediction 231 260 - -
Arst5g00976 546 MobiDBLite consensus disorder prediction 337 369 - -
Arst5g00976 546 FunFam protein indeterminate-domain 12-like 46 114 - -
Arst5g00976 546 SUPERFAMILY beta-beta-alpha zinc fingers 66 163 IPR036236 -
Arst5g00976 546 MobiDBLite consensus disorder prediction 197 275 - -
Arst5g00976 546 MobiDBLite consensus disorder prediction 434 454 - -
Arst5g00976 546 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Arst5g00976 546 MobiDBLite consensus disorder prediction 261 275 - -
Arst5g00976 546 MobiDBLite consensus disorder prediction 434 464 - -
Arst5g00976 546 Gene3D Classic Zinc Finger 47 113 - -
Arst5g00976 546 Gene3D Classic Zinc Finger 121 203 - -
Arst5g00976 546 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Arst5g00976 546 MobiDBLite consensus disorder prediction 1 33 - -
Arst5g00976 546 MobiDBLite consensus disorder prediction 198 230 - -
Arst5g00976 546 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 505 IPR031140 -
Arst5g00976 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Arst5g00976 546 MobiDBLite consensus disorder prediction 9 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00976 Arst-Chr5 9401797 9405531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00976 1 546 IDZ Gene Family AT5G66730 56.406 5.41e-179 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst5g00976 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00976 K25869 - gmx:100806404 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00976 5 9401797 9405531 Arst5g00976 5 9401797 9405531 ECH