Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00967 ATGAATCAAAGATCTATGGATGAACAAATGATGCTTATATCTCAGTTATATCCTGCTGCTGGTGATGCATACACTCAGATAATTGCTCAACAAGGGGAGAACAAGAAAGCAAGAAGGAGGCGTAACAAGAAGAAGAAGGGAGGAGAAAACGGAGGTGGAGAAGGGAACAAAAAGAGAAAGTTGAGTGAAGAGCAAGTGAATCTTCTTGAGATGAATTTTGGGAACGAACACAAACTGGAGTCGGAACGGAAGGACAAGCTAGCTTTGGAGCTTGGTTTGGATCCGAGGCAAGTTGCCGTTTGGTTTCAGAATAGAAGAGCTCGTTGGAAGAACAAGAAACTGGAGGAAGAATACTCCAATCTCAAGAGAGCACATGAAACCACTTTACTCGACAAATGTCGCCTTGAAACTGAGGTGCTGAAACTTAACGAGCAACTTTCTAATGCAAAAGAGGAGATTCAACGATTGCAAGACATGGTCCCAAGCAACAGTTCTAGTTCGCAATCGCAATCACAATCACAGTCAATGGAAATTATGGACCCGCCATTTCTTGGAGATTATGTCTTTTGTGTGCCTGAAACTCATTACATTAATGGCATGGAATGGGTTGATCCGTACGAAAATATTTGGTAA 633 0.4202 MNQRSMDEQMMLISQLYPAAGDAYTQIIAQQGENKKARRRRNKKKKGGENGGGEGNKKRKLSEEQVNLLEMNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKRAHETTLLDKCRLETEVLKLNEQLSNAKEEIQRLQDMVPSNSSSSQSQSQSQSMEIMDPPFLGDYVFCVPETHYINGMEWVDPYENIW 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00967 210 MobiDBLite consensus disorder prediction 47 62 - -
Arst5g00967 210 Coils Coil 104 131 - -
Arst5g00967 210 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Arst5g00967 210 SMART HOX_1 55 116 IPR001356 GO:0003677
Arst5g00967 210 MobiDBLite consensus disorder prediction 157 176 - -
Arst5g00967 210 CDD homeodomain 59 113 IPR001356 GO:0003677
Arst5g00967 210 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Arst5g00967 210 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Arst5g00967 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 31 171 IPR045224 GO:0003700
Arst5g00967 210 Coils Coil 139 159 - -
Arst5g00967 210 Gene3D - 48 120 - -
Arst5g00967 210 SUPERFAMILY Homeodomain-like 56 120 IPR009057 -
Arst5g00967 210 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Arst5g00967 210 MobiDBLite consensus disorder prediction 30 62 - -
Arst5g00967 210 FunFam homeobox-leucine zipper protein ATHB-40 51 120 - -
Arst5g00967 210 Pfam Homeodomain 57 111 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00967 Arst-Chr5 9346536 9348739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00967 1 206 Homeobox Transcription Factor Family AT4G36740 54.751 1.00e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Arst5g00967 Homeodomain 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00967 K09338 - gmx:100809616 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00967 5 9346536 9348739 Arst5g00967 5 9346536 9348739 ECH