Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00945 ATGGCTACTATCCTTTTGGCCATTGTGATTGCCACCCTTTTCACTGCAAACCCTATTTCTTGCGCCAAGCAATCCAAAATAACTGGCATGAAAATGAACGTCATTGATCAATGTTGGAGATTGAATCCCCAATGGAGGAGCCATCGATCGCAACTCGCCAGCTGCTCCATTGGCTATGCGGGCAAGATGATGAACAACATTGGCAATGACCTCGTCTATTATGAAGTTACTGACTCTAGTGATGACCCCATTAACCCTAAGCCTGGTACCTTGCGGTATGGAGCTTCTATGATTCAACAAAAAGTTTGGATTACATTTAAAAGCGACATGAAAATCACATTGGCCAAACCCCTTCTCATTAGTAGCTTTACCGCCATTGATGGTCGTGGCACCAATGTCCACGTTGCTAATAATGCATGCTTCATGATCTTTAAGGCAACGAATGTAATAATCCACGGCATTCGAATCCATCATTGTAAATCACAAGCTCCTGGTTTGGTGGTGGGTCCAAATGGGAAGGTAATTTCATTGGGTCAAGTTGATGGCGATGCAATCAGACTAGTCACTGCCTCAAAGATTTGGATTGATCATAATACACTTCATGATTGCGAAGATGGTCTTCTTGATGTTACACGAGGTTCCACTGATGTCACTATCTCTAACAACTGGTTCCGAAACCAAGATAAGGTTATGCTTCTTGGCCATGACGATGGATATATTAGAGACCGGAACATGAAAGTTACCGTTGTCTACAATCATTTCGGACCGAATTGCAACCAACGCATGCCAAGGATCCGTCATGGATATGCACATGTAGCAAACAATCTTTATCAGGGATGGATGCAATATGCTATTGGTGGAAGCAAAGAACCCAGCCTCAAAAGCCAATCTAACCTCTTCATAGCACCTAAATCCGGGAACAAGGAGGTGACATGGAGAAAAGGCAGTAACGAAAATGGGGATAGATGGGAATTCCATTCAGTAGGGGATGTTTTTGAAAATGGAGCGTCTTTCACGGCAACTGAAGGAGGACGTGTGCCAAAACCCAATTATAGTGAGGAACAACGTTTTAAAGTTCTTGATGCTAAGTCTGTTAGATTTTTGACAAAATCCTCTGGCGTACTACGATGCACCAACAAAAAATCTATTTGCTAA 1155 0.4277 MATILLAIVIATLFTANPISCAKQSKITGMKMNVIDQCWRLNPQWRSHRSQLASCSIGYAGKMMNNIGNDLVYYEVTDSSDDPINPKPGTLRYGASMIQQKVWITFKSDMKITLAKPLLISSFTAIDGRGTNVHVANNACFMIFKATNVIIHGIRIHHCKSQAPGLVVGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLHDCEDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYIRDRNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWMQYAIGGSKEPSLKSQSNLFIAPKSGNKEVTWRKGSNENGDRWEFHSVGDVFENGASFTATEGGRVPKPNYSEEQRFKVLDAKSVRFLTKSSGVLRCTNKKSIC 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00945 384 Gene3D - 32 376 IPR012334 -
Arst5g00945 384 PANTHER PECTATE LYASE 18-RELATED 29 381 IPR045032 GO:0030570
Arst5g00945 384 Pfam Pectate lyase 120 300 IPR002022 -
Arst5g00945 384 PRINTS Pollen allergen Amb family signature 181 202 IPR018082 -
Arst5g00945 384 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Arst5g00945 384 PRINTS Pollen allergen Amb family signature 323 347 IPR018082 -
Arst5g00945 384 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Arst5g00945 384 PRINTS Pollen allergen Amb family signature 117 133 IPR018082 -
Arst5g00945 384 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Arst5g00945 384 PRINTS Pollen allergen Amb family signature 354 377 IPR018082 -
Arst5g00945 384 SMART amb_all 109 306 IPR002022 -
Arst5g00945 384 SUPERFAMILY Pectin lyase-like 22 366 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00945 Arst-Chr5 8988843 8990487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00945 63 315 Polysaccharide Lyase AT5G09280 70.751 3.82e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00945 K01728 - gmx:100780437 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00945 5 8988843 8990487 Arst5g00945 5 8988843 8990487 ECH