Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00928 ATGGGTTGGTTATCCAAGTTGCTTAAGGGCTCTAACCATAGAACTTCAAGAGGGCAATACCATGGCAAATATGGAGAGGACAGAATTTGGGATAACCATCATGCTTCAGTGGATGATTTGAATGATGTTGAGAAAGAGGACATTGATTGTGCAATTGCACTCTCTCTGTCAGAGCAGGATCAGAAAGGAAAAAGTGTTGTTGAGGACGACTCTCAATCCGAAGAAGATGAACAACTTTGTAAAGTTGATGATGAGGAAGATGAGCATACTTGTACAGTTCAACAACAAGAAGAAGAACATCTTGATAAGGTTCGGCCGGATGAAGATGATGAACATCTTTCTAAAGATCAACTTGAGGAAGATGAGCAACTTGCCAGGGCAATCCAAGAAAGTTTGAACATTGATTCTCCTCCTAGTCCTAGATATGAGAATGATTCTATTTTCCAACCTTTATCAAACCTCTTTCCACCAGGATACAGAATCTGTGCTGGATGCAAAGCTGAAATTGGGCATGGAAGATTTTTAAGTTGCATGGGAGCTGTTTGGCATCCACAATGTTTTCGCTGCAATGCTTGCAATCTTCCAATAACAGATTATGAGTTTTCCATGTCTAGCAATTGCCCCTACCATAAATCTTGCTACAGGGAGCAACACCACCCAAGATGTGATGTTTGCAATAACTTTATTCCAACTAATTCAGCTGGTCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGTCCATCGCATGATCGAGATGGAACTCCTCGGTGTTGTAGCTGCGAAAGAATGGAGCCAAGGGATGCAAAGTATCTTTTGCTTGATGATGGTAGAAAGCTATGTTTAGAGTGTCTGGACTCATCAATCATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAGTTCTATGAAGGTTTAAACATGAAAGTTGAGCAGCAAGTTCCTATGCTTCTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTGCCTGAAACTAGAGGACTGTGTTTGTCAGAAGAGCAAACTGTCACCTCGATTTCAAGGAGACCAAAGATAGGAGCAGGCCATCGAGTCGTGGATATGGTAACAGAGCCTTTTAGGCTGATCCGTCGATGTGAAGTGACAGCCATTCTTGTGTTGTATGGCCTTCCTAGGTTGTTGACAGGATCAATCCTGGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAATCTGAGTCCAGAGGTTGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAAATATATTCTGCATCCGGTAGTGATTGTTCATCTTCGTCCTCATCATCGCCTTCCTCCTCCTCCTCCTCCTCATCCTCCTCCTCCGCGTCATCAAAGAAAGGCAAACGGTCTGATTTCGAGAAGAAGCTCGGCGAGTTTTTTAAGCACCAGATTGAGGCTGATACATCATCAGCTTATGGAAAAGGATTCAGGTTGGGAAACGAGGCAGTGCTCAAGTATGGTCTCAGAAGTACCCTTGATCATATCCAAATGACTGGAAGTTTTCCATATTGA 1605 0.4299 MGWLSKLLKGSNHRTSRGQYHGKYGEDRIWDNHHASVDDLNDVEKEDIDCAIALSLSEQDQKGKSVVEDDSQSEEDEQLCKVDDEEDEHTCTVQQQEEEHLDKVRPDEDDEHLSKDQLEEDEQLARAIQESLNIDSPPSPRYENDSIFQPLSNLFPPGYRICAGCKAEIGHGRFLSCMGAVWHPQCFRCNACNLPITDYEFSMSSNCPYHKSCYREQHHPRCDVCNNFIPTNSAGLIEYRAHPFWLQKYCPSHDRDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKVEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTSISRRPKIGAGHRVVDMVTEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYSASGSDCSSSSSSSPSSSSSSSSSSSASSKKGKRSDFEKKLGEFFKHQIEADTSSAYGKGFRLGNEAVLKYGLRSTLDHIQMTGSFPY 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00928 534 MobiDBLite consensus disorder prediction 456 480 - -
Arst5g00928 534 CDD LIM_DA1 162 214 - -
Arst5g00928 534 SMART uim 119 138 IPR003903 -
Arst5g00928 534 SMART uim 43 62 IPR003903 -
Arst5g00928 534 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 119 138 IPR003903 -
Arst5g00928 534 SMART lim_4 161 213 IPR001781 -
Arst5g00928 534 FunFam Protein DA1-related 1 156 215 - -
Arst5g00928 534 Pfam Protein DA1 311 529 IPR022087 -
Arst5g00928 534 ProSitePatterns LIM zinc-binding domain signature. 162 196 IPR001781 -
Arst5g00928 534 MobiDBLite consensus disorder prediction 84 118 - -
Arst5g00928 534 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 187 - -
Arst5g00928 534 Gene3D Cysteine Rich Protein 156 220 - -
Arst5g00928 534 PANTHER PROTEIN DA1-RELATED 2 3 534 IPR045218 -
Arst5g00928 534 MobiDBLite consensus disorder prediction 58 118 - -
Arst5g00928 534 Pfam LIM domain 162 217 IPR001781 -
Arst5g00928 534 ProSiteProfiles LIM domain profile. 160 220 IPR001781 -
Arst5g00928 534 MobiDBLite consensus disorder prediction 1 28 - -
Arst5g00928 534 MobiDBLite consensus disorder prediction 456 476 - -
Arst5g00928 534 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00928 Arst-Chr5 8797508 8801796 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Arst5g00928 DA1-like 1.2e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00928 - - gmx:100817969 883.634