Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00888 ATGGAGCTGAGCTTGGATTTGAGTTTGTCCTTTGTCCCAAAGACCATATCAATGTTCTTGGGCGATGTTTCTCGGAGCACACAAATCTCTGACAAATTGGCCATGCTTGATGATTTCCTCAACCGATTGGAGGATGAGATGACTAAGATCCACGCCTTCAAACGTGAGCTTCCCCTTTGCATGCTCCTCGTCACCGATGCTATAACAAGATTGAAGGAGGAAAAGCTTCGCTGTATGGGAATGCAAGATCCACAACCTCTCACCACTCAAGAACCACATCATAATAATAACAACTGGATGACTTCACTTCAGCTATGGAGGCAGAGGTGTGAAGAAGATTGTTCTGTGCCAGAGAACCCAATCAAGAGAAGGGAGAACAAGAACAGAAGTGGAGGAGGAGGAGGAGTTGCATTGTTGAATGGGAACTCAAAGGAGGTTTCGAAAGTTCCTGGCTTTAGTTTGATGACTACTACTCCAGCACCTGAACTGAAAAGTAGCAGTTCCAAGAGTAATTCTTCTTCTCTGTTCATGAATCGTGTTGAGATTCAAGCCCAACAATCTCAGAATCCTAGGAAACAAAGGCGATGCTGGTCACCGGAGCTACACCGGCGTTTCATCAATGCTCTCCAACAACTTGGAGGAGCACAAGTGGCCACTCCTAAGCAGATAAGGGAACTGATGCAGGTGGAAAGCCTAACAAACGATGAAGTCAAAAGTCACTTACAAAAGTACAGACTTCATGTAAGAAAATTCCCAGTTTCATCTTCAGCTGAGCATGATGCTAATAATAATAATATTGATGATGATGATGAGGATGATCTATGGGAAATGAAGAAGAAAGATCAATGTGGAAAAGGGAACAAAAATTCATCATCACAATCACAATCTGGTTCACCACAGGGTCCTCTACTCTTAGCAGGTTCAGTTAAGGGACTCTCAAGCATGGATGCAGATGATGAGCACTCAGATTGCCGCAATTGGAAAGCTGCTATTCACCACCAACCGCCAGAATCTGATAATCACAGCCGCTAA 1032 0.4399 MELSLDLSLSFVPKTISMFLGDVSRSTQISDKLAMLDDFLNRLEDEMTKIHAFKRELPLCMLLVTDAITRLKEEKLRCMGMQDPQPLTTQEPHHNNNNWMTSLQLWRQRCEEDCSVPENPIKRRENKNRSGGGGGVALLNGNSKEVSKVPGFSLMTTTPAPELKSSSSKSNSSSLFMNRVEIQAQQSQNPRKQRRCWSPELHRRFINALQQLGGAQVATPKQIRELMQVESLTNDEVKSHLQKYRLHVRKFPVSSSAEHDANNNNIDDDDEDDLWEMKKKDQCGKGNKNSSSQSQSGSPQGPLLLAGSVKGLSSMDADDEHSDCRNWKAAIHHQPPESDNHSR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00888 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 324 IPR044787 GO:0003700|GO:0006355
Arst5g00888 343 MobiDBLite consensus disorder prediction 286 302 - -
Arst5g00888 343 MobiDBLite consensus disorder prediction 280 343 - -
Arst5g00888 343 MobiDBLite consensus disorder prediction 119 142 - -
Arst5g00888 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 192 247 IPR006447 GO:0003677
Arst5g00888 343 FunFam Myb family transcription factor 191 249 - -
Arst5g00888 343 MobiDBLite consensus disorder prediction 314 343 - -
Arst5g00888 343 Gene3D - 191 248 - -
Arst5g00888 343 Pfam Myb-like DNA-binding domain 194 245 IPR001005 -
Arst5g00888 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 249 IPR017930 -
Arst5g00888 343 SUPERFAMILY Homeodomain-like 190 250 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00888 Arst-Chr5 8345331 8347504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00888 1 250 G2-like Transcription Factor Family AT2G03500 39.189 6.71e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Arst5g00888 Myb_DNA-binding 2.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00888 - - gmx:100785723 321.627