Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00887 ATGTCGTCGTCGAATTCACCTTGCGCAGCGTGCAAGTTCTTGCGGAGGAAGTGCACGCAGGAGTGCGTTTTCGCGCCGTATTTTCCGCCGGACAACCCGCAGAGGTTCGCATACGTGCACAAGGTTTTCGGCGCCAGCAACGTCGCCAAGCTGCTGAACGAACTCAACGCCGCGCAGAGAGACGACGCCGTGAAGTCGTTGGCGTACGAAGCGGAGGCGCGTTTAAGAGACCCCGTCTACGGTTGCGTGGGTCTCATATCGGTGCTGCAGCACCGGCTCCGGCAGATCCAGGTGGAGCTCACCAACGCCAAGAAGGAGCTCGCCACCTACATTGGCCCTCAGGCACTGCAGGGTGTCCCAACCACCGCCATTCTCCAGCATCACCATTCCTTTGCCTCGCAGATGTTCCCTTACAACGGCGCCATGGCTGCTTCGCCAGCTATTGCTCATGGCGGACAGTTGATGATTCGCGACGCTCAGACTGCCCCTCCGCCTCCGCAGCAGCAGATCTTGGAGGCTCAGCAGCTGGCTGCTGCGGTGGTGGTGAGGGATCAACAAGATATGTTCAGAGGGTATGATCAACATCATCAACAGCAAGAGTTTCTGAGGTTTAATGGTGGAGGGTTTGATATGGGTTCGGTTTCTTCCGGTGGTGGTGGGTACAGCCAGGTTAGTGGCGGTGGAAGTGGTGGTGGTTCTGGTGATCAGTTGTCTCCTTCGTTGGCTTTGGGGTCTTTTGACAATCCATACCATATGCAGCAAGGGGAAAGCCATGCTCACCATCTTCCTCTTCAGGCGCAGCTGCTTCTCCCACCGCAGCAAAAGCAGGCTCAACAGCAAGCACAGTCACAGCATATTCCCGGCCACCACCACCAGCAACCTTCGGAAAGCGAGGAGTGTAGGAGTGTCGGTCCATCTTGTTGA 924 0.5703 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQVELTNAKKELATYIGPQALQGVPTTAILQHHHSFASQMFPYNGAMAASPAIAHGGQLMIRDAQTAPPPPQQQILEAQQLAAAVVVRDQQDMFRGYDQHHQQQEFLRFNGGGFDMGSVSSGGGGYSQVSGGGSGGGSGDQLSPSLALGSFDNPYHMQQGESHAHHLPLQAQLLLPPQQKQAQQQAQSQHIPGHHHQQPSESEECRSVGPSC 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00887 307 MobiDBLite consensus disorder prediction 214 260 - -
Arst5g00887 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 271 - -
Arst5g00887 307 MobiDBLite consensus disorder prediction 272 307 - -
Arst5g00887 307 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Arst5g00887 307 Coils Coil 86 106 - -
Arst5g00887 307 MobiDBLite consensus disorder prediction 272 290 - -
Arst5g00887 307 MobiDBLite consensus disorder prediction 216 243 - -
Arst5g00887 307 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00887 Arst-Chr5 8322105 8324840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00887 1 230 AS2 family AT5G66870 51.550 5.72e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Arst5g00887 LOB 1.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00887 - - lja:Lj2g3v1834030.1 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00887 5 8322105 8324840 Arst5g00887 5 8322105 8324840 ECH
Arst5g00887 5 8322105 8324840 Arst1g00022 1 351257 352225 PCT