Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00861 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATTCCATGGGACGTGGACACTGAGGGCTTGAGGGAATACATGAGCAAGTACGGTGAATTGGAAGATTGTATTGTTATGAAGGAGCGATCAACTGGACGATCTCGTGGATTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGATGTTCTATCAGGTGAACATGTTCTTGGCAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGAGCTCCACCCAAAAAAGTAACCAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCATCTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATCTATACATGCCAAAGGATCAAGGATCAAAAATGCATCGTGGAATTGGTTTTATCACCTTTGCAAGTGCAGATTCTGTCGAGAGTTTGATGGCAGAAACCCATGAACTGGGAGGTTCTACCGTGGTGGTTGATCGAGCTACACCCAAGGATGATGACTTCAAGCCAGTAGGCAGAATGCCACAGGGAGGGTATGGTGCATATAATGCTTATATTTCTGCAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGATCATCCAGGCCCAGTCTACGGAAGGGGAGAACCATCTCGTGGAATCGGTAAAAAGATTTTTGTTGGCCGACTTCCCCCAGAGGCAACTTCTGAAGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTACGTTCCCAGGGATCCTAAGAGATCAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCACGAAGGCCTCATGAAATTTGTGGACAACAGGTAGCATTAGATTCAGCCACACCTGTTGATGATGCAAGTCCGAGTGAGAATTTTATGATGAATGGCGTGGGTTCTTTTGGGGGCTATGGAGGTCCTATGCGAACTTATGGGAGGATGTATGGTAGCCTGGACTTCGACGATTGGGGTTATGGAATTCCCAGTGGGAGGCCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1080 0.4481 MEQRKLVVLGIPWDVDTEGLREYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLSGEHVLGNRMLEVKVATPKEEMRAPPKKVTRIFVARIPQSVTEASFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASADSVESLMAETHELGGSTVVVDRATPKDDDFKPVGRMPQGGYGAYNAYISAATRYAALGAPTLYDHPGPVYGRGEPSRGIGKKIFVGRLPPEATSEDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFVTFAEDGVADRVSRRPHEICGQQVALDSATPVDDASPSENFMMNGVGSFGGYGGPMRTYGRMYGSLDFDDWGYGIPSGRPSRADWRYRPY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00861 359 SMART rrm1_1 225 296 IPR000504 GO:0003723
Arst5g00861 359 SMART rrm1_1 93 164 IPR000504 GO:0003723
Arst5g00861 359 SMART rrm1_1 5 76 IPR000504 GO:0003723
Arst5g00861 359 Gene3D - 85 174 IPR012677 -
Arst5g00861 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Arst5g00861 359 SUPERFAMILY RNA-binding domain, RBD 224 324 IPR035979 GO:0003676
Arst5g00861 359 SUPERFAMILY RNA-binding domain, RBD 3 87 IPR035979 GO:0003676
Arst5g00861 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Arst5g00861 359 SUPERFAMILY RNA-binding domain, RBD 87 187 IPR035979 GO:0003676
Arst5g00861 359 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Arst5g00861 359 FunFam RNA-binding family protein isoform 1 221 304 - -
Arst5g00861 359 Gene3D - 223 304 IPR012677 -
Arst5g00861 359 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Arst5g00861 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Arst5g00861 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 279 IPR000504 GO:0003723
Arst5g00861 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Arst5g00861 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Arst5g00861 359 Gene3D - 1 84 IPR012677 -
Arst5g00861 359 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 221 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00861 Arst-Chr5 7863742 7869459 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00861 5 86 Eukaryotic Initiation Factors Gene Family AT2G23350 35.714 3.50e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00861 K14411 - gmx:100795240 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00861 5 7863742 7869459 Arst5g00861 5 7863742 7869459 ECH