Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00857 ATGGATGTGGACATATTCAAAACCTCTACTGCTAGTGACAGCATGGACATGATGGCAATGATGATGCAGCAGATGGAAAAGCTTCCTCCTCCTGAATTATCTGAACCTCCTTTTTATACCACCTACCCATCACAAACCGACTTCCATAATAACAATAATGTTGAACCAAACTTGATTAATCCCACTTTCATCTTCCAACAACAACATTCCATGGCACCACCACCACCACCACCTGTAATCACCACCAACAACGATGATATTATTACTTCTTCTTTTCCCTACCCTCCTCCTCCTCCTCCTTCTTGTTCCGATGGCAGCAACAAGAAGAACTCGATGGCTGCCATGAGGGAGATGATATTCCGGGTGGCGGTTATGCAACCGGTTCACATAGACCCGGAGTCTATAAAGCCACCAAAGCGGAGGAACGTGAAGATCTCAAAGGATCCTCAGAGCGTGGCGGCGAGGCACAGGAGGGAGAGGATAAGCGAGAGGATAAGGATTCTTCAGAGATTAGTCCCCGGTGGAACTAAAATGGACACAGCTTCCATGTTGGATGAGGCCATTCACTACGTCAAGTTCTTGAAGAAGCAAGTGCAGACTCTCGAACAAGCAGGAGGAGGGAGAACATGTAATAATAATAATGGCTTCACGGGATTCTCATCATCCATTAATGGCAGTAATTATCCTGCTATGGTTAAAGGTTGCCACCAACCTTATCCTCCCATGCTGATGAGTTCTTCTGCTTCAAAACAATTGCTCAGCTGA 765 0.4588 MDVDIFKTSTASDSMDMMAMMMQQMEKLPPPELSEPPFYTTYPSQTDFHNNNNVEPNLINPTFIFQQQHSMAPPPPPPVITTNNDDIITSSFPYPPPPPPSCSDGSNKKNSMAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGGGRTCNNNNGFTGFSSSINGSNYPAMVKGCHQPYPPMLMSSSASKQLLS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00857 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 203 IPR036638 GO:0046983
Arst5g00857 254 CDD bHLH_AtIND_like 146 202 - -
Arst5g00857 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Arst5g00857 254 SMART finulus 151 200 IPR011598 GO:0046983
Arst5g00857 254 FunFam BHLH transcription factor 148 212 - -
Arst5g00857 254 Coils Coil 184 204 - -
Arst5g00857 254 Gene3D - 144 210 IPR036638 GO:0046983
Arst5g00857 254 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 238 IPR045843 GO:0003700|GO:0006355
Arst5g00857 254 MobiDBLite consensus disorder prediction 88 108 - -
Arst5g00857 254 Pfam Helix-loop-helix DNA-binding domain 155 194 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00857 Arst-Chr5 7828618 7829713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00857 17 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 57.619 3.31e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst5g00857 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00857 - - gmx:100796649 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00857 5 7828618 7829713 Arst5g00857 5 7828618 7829713 ECH