Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00850 ATGTCAGACGAAGAAGCTGCTGCAACTACCGCCGCCGGTAGGAGAAGGACCAGAGGTACCGCTTCCTCCGCCCGCAGCGAGGCCCTAGAGCGTCTCAAAGCCCGTGTCCGCGGCGGGCCCCAGATCAGGCTCGAAAACCCTATCTACGATACTGTCGAGGAAGAAGAGTACAACGCCCTTGTCGCCAAGCGCCGCGAGCAGGCCCGTGCCTTCATCGTTGACGACGATGGCCTCGGCTACGGCGATGAGGGGGAGGAAGAGGACTGGTCTAAGGGAGGCTTCTCTCTCTCCTCTGACGAATCCGATGGCGCCGAAAATGAAGCCAAGCCAAAGCGGAAGAAGCTTGAAAAGAAAGAACATAATCCCAACCAGAAACGCACATCGGCTGCGCTTTCCGCCGCCGCTGTCGGCGCCCAGCGGCTATCCTCGATGTTCACCTCATCGCTGTTCAAGAAGAGCAGGGACGACAAGGCCCCCGACAGCATCGTTGACGATGTTCTGGCGGAGTTTGCAGCCGACGAGACCGATAGGGAACGGCGGAGAAGAATCCATCCGAAAGCCATTCCCAATTCGAATTCAAATTCGTCCTCTGCTACAAACGATGCTCTTCGGATTAATCGCGATTTCGTTAGCAATTCGTCAATTGTTGGAGCATCTGATTTGATGAGAGGTTCTTCGTTGCTCAACACTGCTGTAAATTGTGATGTTGAGTCGGTTAGGGTTGTTAGCAATGACGTCAGTGATTTGGGTTCAGAGCAGAAGAAAGGCGAGGCAGTTAAAGAAAATGAGCTTTCAATTGAATGCTCGGATAATGGGAAAGTTTTTAGTTCTGAGAATGGTGATGCATCAATTGAGCAAGTTCCGAGTAATGTTAATGTTGGTAAGGAGGAAGTTGTGAAGGACTCTAAGGCAGAGGAAAAACCTGTTGCTGTGAAAAAGGAGTTGTTTACTTTGAATGCAAAGCTTAAGGAAGAAAAAGAGGACCCTGCGTTGAGTGCTACTGCGGGTTGGCAAGCAGTGAGAAATGGTGGTGCAGCGAATGCAAATGTTGGGGATTCGAAAGCATTGAGAGAGGCTTTGCATAAAGAAGAACACTCGGAGTTCAATCTGGAGGAAGATGGTTCGCTACCTTTCTACATACTCGATGCCTATGAGGAGTTTAATGGAGCGAATAGGGGAACACTTTATTTATTTGGGAAGGTTAAAGCCGGGAATTCGTATCAGAGTTGTTGTGTTGTTGTGAAGAACATGCAAAGATGTGTCTATGCCATTCCAAGTCACCCGATACATCTTACTGATGAAATGGTGAAACTTGAGAAAGATGCTAAAAAATCTGCAGATTTCCATAAAAAGCTGCAAGATGCAGTATCTGGTTTAAAGAACGAGTTAGCAAAACATCTTCTGAACTTGAATGTTTCATGCTTTAGTATGGCTCCTGTTAAGAGGAAGTATGCATTTGAAAGGTTCGAAATTCCTTCTGGTGAAAGTTATGTGCTTAAAATCAGTTATCCATTCAAGGATCAAATACTTCCTGCGGACCTGAAAGGAGAAAGTTTCTCTGGTCTTTTAGGAACTCATTACAGTGCTCTGGAGCTTTTTCTGGTTAAAAGAAAGATTAAGGGACCTTCGTGGCTACAGGTTTCGAACTTTTCAAACTGCCCAACTTCTGAGAGGGAAAGATTTGTTAGCTGGTGCAAATTTGAAGTGATTGTTGACTCCCCTAAAGACATCAGGGTTTCAACTTCATCAAAAATCAGTTTTGAGATTCCTCCTGTGGTTGTCACAGCAATAAATTTGAAAACCACCATAAATGAAAAACAGAACGTAAATGAGATTGTATCTGCATCTATAGTCTGCTGCAATATGGTTAAGATTGACACACCTATGTTGGCTTCAGAATGGAAGAGACCTGGAATGCTTACCCATTTTACTGTCATTCGTAAAATTGATGGGAATATATTTCCACTGGGGTTCAGCAAGGAGGTTACAGAGAGAAACTCAAAAGCTGGGTCAAATGTTCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGCTGAATCGCCTGATGACAGAATTACACAAGTTGGATAGCGATGTTCTTGTTGGGCATAATATATCTGGATTTGACCTGGAGGTACTCCTCCATAGATCCCAGGCGTGCAAAGTACCAAGCAACATGTGGTCTAAACTAGGCCGCCTCAAGCGTTCTGCATTGCCTAGGCTTGATAGAGGAAGCAAGGCATTTGGTTCTGGAGCTCGTCCTGCTGTCATGTCTTGTATGTCTGGCCGGCTTCTTTGTGATACATTCTTGTGTTCCCGTGATCTGCTCAAAGAGGTCAGTTATTCATTAACTGAACTCACAAAAACGCAGCTGAAGAAGTTTAGGAAGGAAGTTGCTCCACATGATGTTCCAAAGAAGTTCCAATCAGCTGAATCCCTAATTGAGCTTATTGAATGTAGTGAAACGGATGCATGGTTGTCCATGGAACTCATGTTTCATTTGAGTGTTCTTCCTCTCACCCGCCAGCTGACTAATATTAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGGGCACAGAGAGTGGAGTTTCTTTTGTTGCATGCTTTCCATGCAAAGAAATATATGGTGCCAGACAAAATTCCAAACTATGCAAAAGAAACAACATTGACGAAACGCAAAGTAGCTCATGGTGTTGAGGATAGCAACTTACAAGAAGCAGATGGTAATGAGGCAAACTATGATAATGATGCTGCCGATACTGATAATAAGAAAAGCAAAAAGGCTCCTTCTTATGCTGGAGGTCTGGTATTAGAGCCAAAGAAGGGACTATATGACAAATATATACTACTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATATAATATATGCTTTACCACTGTTGAAAGATCTCAAGGTGCATCATTTTCCCGTTTACCATCCAGTCTAGAAACTGGGGTCTTGCCGGAGGTAAGAAAACACTTACTGGTAAAAAAGTGGATGAAGAAAGCATCTGGTCTTAAAGTGCAGCAACTGGACATTCAGCAGCAAGCATTGAAGCTTACTGCAAACAGTATGTATGGATGCCTAGGATTTTCCAATTCAAGATTTTATGCAAAGCCAATTGCTGAACTTATAACCCTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTCATATATGGTGATACTGATTCAATAATGATATACAGTGGTCTAGATGATATTGCAAAAGCAAAAGCAATGGCTTCAAAAGTTATTCAAGAGGTCAATAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGGATGCTACTACTTAAGAAAAAGAAATATGCAGCTGTTAAAGTGCAGTTCAACGATGATACCCCGTATGAGGTTATTGAACGTAAAGGTCTTGATATTGTCCGCCGGGATTGGAGCTTATTAGCTAAAGAATTGGGTGATTTTTGCTTGACTCAAATTTTGTCAGGAGGATCATGTGAAGATGTTGTTGAATCAATTCACAATTATCTCATGCAGGAGCAAGAAAAAATGAGGAGTGGACAAGTACCATTGGAGAAATATGTCATCAATAAAACATTGACTAAACCTCCGGAGGCTTATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGAATGAAGCAACAAGGTTACTCCTCTGGTTGTTCTGTTGGTGATACAATCCCTTACATAATTTGCTATGAAGAGGGCTGTAGTTCAGGTAGTGCAACAGGTATTGCTCAGCGTGCAAGGCATCCCGATGAACTAAAACAAGAGCAAGGGAAATGGCTTATTGACATTGAGTACTATTTGTCACAACAGATTCATCCAGTGGTATCACGTCTTTGTGCATCAATCCAGGGCACAAGCCCAGAAAGACTGGCCGACTGTTTAGGGCTTGACTCATCAAAGTTTCAACATAAATCAAGTGAAGCTCCAAGTAGTGATCCTACAAGCTCACTTTTATTTGCTGCTGATGACGAAGAAAGGTACAGGGGATGTGAGCCACTGGTATTGTGTTGCCCCAGCTGCTCTGATTCTTTTGACTGCCCACCTGTTTTTAAGTCAATTTGTTTGTTGGGAAGTGAAAAGATAAGCAGCTCAGGCACGGAGGAATCCAGTTACAAATTCTGGCATAAACTGCGATGTTCCAAATGCCCGGAAGATGGTGTTGGAAGAATATCTCCTGCAATGCTAACCAATCAGGTCAAAATGCAAACAGAGAAGTTTGTTTTAATGTACTACAGAGGTGTACTGATGTGTGATGATGAAACGTGTAAGCATACGACACGCAGTATCAACCTTAAGTTGGTGGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGATGCAACGGCCGTCTCCACAGAAAGTACACCGAGGCAGACTTGTACAAGCAGCTCTCATATTTCTGCCATGTGTTGGATACTTTTTGCAGTATGGAGAAGATGGAGGCTAAATCTAGGATGCTAATTGAGAAGGAGTTGATGAAGATTAGACCAATGGTTGATCTAGCAGCATCCACGGTACAGAAGTTAAGAGACCGTTGTGCCTACGGTTGGGTGAATTTGCAGGACTTTGTTGTTCCTGTTTAA 4668 0.4336 MSDEEAAATTAAGRRRTRGTASSARSEALERLKARVRGGPQIRLENPIYDTVEEEEYNALVAKRREQARAFIVDDDGLGYGDEGEEEDWSKGGFSLSSDESDGAENEAKPKRKKLEKKEHNPNQKRTSAALSAAAVGAQRLSSMFTSSLFKKSRDDKAPDSIVDDVLAEFAADETDRERRRRIHPKAIPNSNSNSSSATNDALRINRDFVSNSSIVGASDLMRGSSLLNTAVNCDVESVRVVSNDVSDLGSEQKKGEAVKENELSIECSDNGKVFSSENGDASIEQVPSNVNVGKEEVVKDSKAEEKPVAVKKELFTLNAKLKEEKEDPALSATAGWQAVRNGGAANANVGDSKALREALHKEEHSEFNLEEDGSLPFYILDAYEEFNGANRGTLYLFGKVKAGNSYQSCCVVVKNMQRCVYAIPSHPIHLTDEMVKLEKDAKKSADFHKKLQDAVSGLKNELAKHLLNLNVSCFSMAPVKRKYAFERFEIPSGESYVLKISYPFKDQILPADLKGESFSGLLGTHYSALELFLVKRKIKGPSWLQVSNFSNCPTSERERFVSWCKFEVIVDSPKDIRVSTSSKISFEIPPVVVTAINLKTTINEKQNVNEIVSASIVCCNMVKIDTPMLASEWKRPGMLTHFTVIRKIDGNIFPLGFSKEVTERNSKAGSNVLCVESSERALLNRLMTELHKLDSDVLVGHNISGFDLEVLLHRSQACKVPSNMWSKLGRLKRSALPRLDRGSKAFGSGARPAVMSCMSGRLLCDTFLCSRDLLKEVSYSLTELTKTQLKKFRKEVAPHDVPKKFQSAESLIELIECSETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEFLLLHAFHAKKYMVPDKIPNYAKETTLTKRKVAHGVEDSNLQEADGNEANYDNDAADTDNKKSKKAPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSQGASFSRLPSSLETGVLPEVRKHLLVKKWMKKASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMASKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFNDDTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNYLMQEQEKMRSGQVPLEKYVINKTLTKPPEAYPDAKNQPHVLVAQRMKQQGYSSGCSVGDTIPYIICYEEGCSSGSATGIAQRARHPDELKQEQGKWLIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQHKSSEAPSSDPTSSLLFAADDEERYRGCEPLVLCCPSCSDSFDCPPVFKSICLLGSEKISSSGTEESSYKFWHKLRCSKCPEDGVGRISPAMLTNQVKMQTEKFVLMYYRGVLMCDDETCKHTTRSINLKLVGDSERGTVCPNYPRCNGRLHRKYTEADLYKQLSYFCHVLDTFCSMEKMEAKSRMLIEKELMKIRPMVDLAASTVQKLRDRCAYGWVNLQDFVVPV 1555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00850 1555 PRINTS DNA-directed DNA-polymerase family B signature 1073 1081 IPR006172 GO:0000166|GO:0003676|GO:0003887
Arst5g00850 1555 PRINTS DNA-directed DNA-polymerase family B signature 949 962 IPR006172 GO:0000166|GO:0003676|GO:0003887
Arst5g00850 1555 PRINTS DNA-directed DNA-polymerase family B signature 1020 1032 IPR006172 GO:0000166|GO:0003676|GO:0003887
Arst5g00850 1555 SUPERFAMILY DNA/RNA polymerases 925 1323 IPR043502 -
Arst5g00850 1555 MobiDBLite consensus disorder prediction 177 199 - -
Arst5g00850 1555 MobiDBLite consensus disorder prediction 897 931 - -
Arst5g00850 1555 FunFam DNA polymerase 1151 1337 - -
Arst5g00850 1555 Gene3D DNA Polymerase alpha, zinc finger 1346 1540 IPR038256 -
Arst5g00850 1555 SUPERFAMILY Ribonuclease H-like 372 878 IPR012337 -
Arst5g00850 1555 SMART polmehr3 590 1087 IPR006172 GO:0000166|GO:0003676|GO:0003887
Arst5g00850 1555 CDD DNA_polB_alpha_exo 590 841 - -
Arst5g00850 1555 Gene3D - 590 905 IPR036397 GO:0003676
Arst5g00850 1555 Gene3D - 378 576 - -
Arst5g00850 1555 MobiDBLite consensus disorder prediction 1 42 - -
Arst5g00850 1555 Pfam DNA polymerase family B 849 1307 IPR006134 GO:0000166|GO:0003677
Arst5g00850 1555 FunFam DNA polymerase 1346 1541 - -
Arst5g00850 1555 MobiDBLite consensus disorder prediction 74 133 - -
Arst5g00850 1555 Gene3D Palm domain of DNA polymerase 918 1137 IPR023211 -
Arst5g00850 1555 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 19 1552 - -
Arst5g00850 1555 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 19 1552 - -
Arst5g00850 1555 Coils Coil 449 469 - -
Arst5g00850 1555 NCBIfam DNA polymerase (pol2) 48 1305 - -
Arst5g00850 1555 Coils Coil 1101 1121 - -
Arst5g00850 1555 CDD POLBc_alpha 925 1323 IPR045846 GO:0003887|GO:1902975
Arst5g00850 1555 Pfam DNA polymerase family B, exonuclease domain 407 784 IPR006133 -
Arst5g00850 1555 ProSitePatterns DNA polymerase family B signature. 1075 1083 IPR017964 GO:0000166|GO:0003676
Arst5g00850 1555 FunFam DNA polymerase 590 904 - -
Arst5g00850 1555 Gene3D - 418 540 - -
Arst5g00850 1555 Gene3D Helix hairpin bin 988 1034 - -
Arst5g00850 1555 Gene3D - 1151 1336 IPR042087 -
Arst5g00850 1555 Pfam DNA Polymerase alpha zinc finger 1347 1551 IPR015088 GO:0003887|GO:0006260
Arst5g00850 1555 Pfam DNA polymerase alpha subunit p180 N terminal 35 89 IPR024647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00850 Arst-Chr5 7752715 7764645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00850 9 1553 Core DNA Replication Machinery Family AT5G67100 59.593 0.0 1813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00850 K02320 - gmx:100798779 2085.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00850 5 7752715 7764645 Arst5g00850 5 7752715 7764645 ECH