Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00848 ATGGGAGATCATATGTACAACTATGACAAGAATCTGTCATCGTCCTCTTCTTCACAGGACGAAATCTCTCTTTTCCTGCGTCAGATTTTGCTGCGTTCCTCACAACCTCACCAAGATTCACCACCACCGCCACAACAACAACAACAACAACAACTCCCTTCTTCTTCTTCCTCTTCTTGTTTCCCATCAACCTCACAGCTTCAAGATGGGAAGATCTCTGCACTTGGTTCCACCCCTGCTGGTTTTCTCTCTGCCTCCTCCATGAAGGGGCACGGAGGTAATTCTGCTCCAAATGTCTCTTCTTCTTCCGTAGGACTCAGTGCCAACGATACTGATGACTATGATTGCGAAAGTGAGGAGGGTGTTGAGGCCTTGGCAGAAGATGTTCCAGCAAAGCCTGTACCTTCTAGGAGTTCATCAAAGAGGAGCAGAGCAGCAGAAGTTCATAATTTGTCAGAAAAGAGAAGGAGGAGTAGGATCAATGAAAAGATGAAGGCCTTGCAAAATCTAATTCCGAATTCTAACAAGACTGATAAGGCTTCAATGCTGGATGAGGCTATTGAATATCTTAAACAGCTTCAGCTCCAAGTACAGATGTTATCGATGAGAAATGGATTGAGTTTGCACCCTATGAGCTTTCCCGAAGGATTGCAGCCTCTACAGTTCTCAAGAATGAGTATGGAGTTTAGTGAAGAAAACAGGGCCATCCCTGTAAACATGACAGAAAGTCTGCCTTTGCACCAAGGCAACCCCTTGCACTATGCATCCCTACCTAACAAACCAACCATGCCAAATCAGCCATCAGTGACTTACCCTTCATATCTTAACAACTCAGAAGCGCCGTTTGGGCTGGAACCGCCAATCCTAACACATATAAAACACCTTCAACCAGGAAGATTTTCTGAGGCGCATAGGGAAGACACACTGCAGCAGCAGCAATCAAATGCAAGCCATTCAGATACCGATCCATTAGGTGGTTCTCAAGTTGCAAAAGAGTTGGAGACAGGAACCATGGTCACAACATCACTCTCCTTTGACCTGCAAACATGTGAACCTAAGGACAACAACCCTTTGCAAATTTGCATTGCTGGAAGCGATCAATCATCATCAGTGATCATTAGGAATAGTTAA 1131 0.4492 MGDHMYNYDKNLSSSSSSQDEISLFLRQILLRSSQPHQDSPPPPQQQQQQQLPSSSSSSCFPSTSQLQDGKISALGSTPAGFLSASSMKGHGGNSAPNVSSSSVGLSANDTDDYDCESEEGVEALAEDVPAKPVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMSFPEGLQPLQFSRMSMEFSEENRAIPVNMTESLPLHQGNPLHYASLPNKPTMPNQPSVTYPSYLNNSEAPFGLEPPILTHIKHLQPGRFSEAHREDTLQQQQSNASHSDTDPLGGSQVAKELETGTMVTTSLSFDLQTCEPKDNNPLQICIAGSDQSSSVIIRNS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00848 376 MobiDBLite consensus disorder prediction 142 156 - -
Arst5g00848 376 MobiDBLite consensus disorder prediction 300 327 - -
Arst5g00848 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 204 IPR036638 GO:0046983
Arst5g00848 376 MobiDBLite consensus disorder prediction 28 156 - -
Arst5g00848 376 Coils Coil 183 203 - -
Arst5g00848 376 MobiDBLite consensus disorder prediction 49 109 - -
Arst5g00848 376 SMART finulus 150 199 IPR011598 GO:0046983
Arst5g00848 376 Gene3D - 139 203 IPR036638 GO:0046983
Arst5g00848 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
Arst5g00848 376 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 15 311 IPR031066 -
Arst5g00848 376 FunFam Basic helix-loop-helix transcription factor 139 202 - -
Arst5g00848 376 CDD bHLH_AtPIF_like 145 206 IPR047265 -
Arst5g00848 376 MobiDBLite consensus disorder prediction 307 324 - -
Arst5g00848 376 Pfam Helix-loop-helix DNA-binding domain 148 194 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00848 Arst-Chr5 7730728 7734320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00848 109 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 48.673 3.15e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst5g00848 HLH 4.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00848 - - adu:107487805 652.899