Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00828 ATGTGGGATCTGAATGACTCTCCCGACCACAGAAAGGACTACGACTCTGAAGAAGCTTGTTCTTCACCCAAGACTGCCACTACTTCCATGGACGATGACGTCAGAGGCAAGACCCTCCGATCTGCCTCCAATTCCAGCTCCTCTGCAGTCCTCCTAGAAGACGGATCCGAAGAAGACGAAGAACAAGCCAGCAGAACAACAACTACTCTCAACAACATCAACAGTACCAGCAAGATATTCGGCTTCTCCGTCACCCCCATGGACGGCGACGACAACCCTCCCGTGACCCATCAGTTTTTCCCGGTGGAGGACTCCGGCTGTGGCGGAGGAGGAGGAGGAAGCTCGTCGTCGTCGTCGTTCCCTCGAGCGCACTGGGTTGGCGTGAAGTTCTGCCAATCGGAAGCAGCAGTTGGGGGCGGTGGGAAATCGGCGGCGGTGGAAGTATCTCAGCCTATGAAGAAGAGCCGGAGAGGACCAAGGTCTCGGAGCTCACAGTATAGAGGAGTGACCTTTTACCGAAGAACGGGTCGTTGGGAATCTCATATTTGGGATTGTGGAAAACAAGTTTATCTGGGTGGATTTGACACCGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCAATTAAGTTCCGCGGAGTGGAGGCTGACATTAACTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGACGAATTTGACAAAGGAAGAATTTGTGCACGTGCTTCGGCGACAAAGCACTGGCTTTCCAAGAGGAAGTTCCAAATATAGAGGCGTTACCTTGCACAAGTGTGGAAGATGGGAGGCTCGTATGGGCCAATTTCTAGGCAAAAAGTACGTTTATCTGGGCCTCTTTGACACTGAGATTGAAGCTGCCAGGGCATATGACAAAGCAGCAATCAAATGCAATGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGAAAACGAGCTTAATTCTGAATCGTCAGGAGGCAACGGTGCAGCAGATCACAATCTGGATCTAAGTTTGGGCAATCCAAGTTCAAAGCATAGCAGTACAACAGATTGGCACAATGAGGGAGCCAACAATAACAAGCATAAGCTGGTGAATATACTACCAAAACCATGTAGTAGCAGAAGCAACATAGAGAGTGAAGCCATGCCCCCAATGCGGCTGCTAAGTACTCATCAAACGCAATTTCCGCTCTCAAACGAAATGCATAGATACGGTCCTTATTATAGATCCCATGCAGCTGGAGAAACTCCGCATCAAATGCTACACGCGTTTCCACCAAATTTTCATTTTCCAAGCAGCAGCAAAGGAGGCCGAATTGGAAGCGAGCTTTCGCTGTCATCATCAATGAGCGATCAAGAACAGTGGCAAGCAGGAGCTGGAGGAGGGCCTCCACATTTGTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCGCCGCAGATTTTAACACCCTCGTCCCAAGGTTGGATCCACAAAAATGGCTTCCACACTCTCATGAGACCCTCTTAA 1518 0.4967 MWDLNDSPDHRKDYDSEEACSSPKTATTSMDDDVRGKTLRSASNSSSSAVLLEDGSEEDEEQASRTTTTLNNINSTSKIFGFSVTPMDGDDNPPVTHQFFPVEDSGCGGGGGGSSSSSSFPRAHWVGVKFCQSEAAVGGGGKSAAVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGGNGAADHNLDLSLGNPSSKHSSTTDWHNEGANNNKHKLVNILPKPCSSRSNIESEAMPPMRLLSTHQTQFPLSNEMHRYGPYYRSHAAGETPHQMLHAFPPNFHFPSSSKGGRIGSELSLSSSMSDQEQWQAGAGGGPPHLLATAAAASSGFPPQILTPSSQGWIHKNGFHTLMRPS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00828 505 PRINTS Ethylene responsive element binding protein signature 296 316 IPR001471 GO:0003700|GO:0006355
Arst5g00828 505 PRINTS Ethylene responsive element binding protein signature 258 269 IPR001471 GO:0003700|GO:0006355
Arst5g00828 505 Gene3D AP2/ERF domain 256 315 IPR036955 GO:0003700|GO:0006355
Arst5g00828 505 Gene3D AP2/ERF domain 164 223 IPR036955 GO:0003700|GO:0006355
Arst5g00828 505 MobiDBLite consensus disorder prediction 142 164 - -
Arst5g00828 505 SUPERFAMILY DNA-binding domain 164 222 IPR016177 GO:0003677
Arst5g00828 505 FunFam AP2-like ethylene-responsive transcription factor 164 223 - -
Arst5g00828 505 MobiDBLite consensus disorder prediction 1 19 - -
Arst5g00828 505 ProSiteProfiles AP2/ERF domain profile. 257 314 IPR001471 GO:0003700|GO:0006355
Arst5g00828 505 MobiDBLite consensus disorder prediction 440 458 - -
Arst5g00828 505 MobiDBLite consensus disorder prediction 321 362 - -
Arst5g00828 505 FunFam AP2-like ethylene-responsive transcription factor 256 316 - -
Arst5g00828 505 CDD AP2 256 316 IPR001471 GO:0003700|GO:0006355
Arst5g00828 505 SMART rav1_2 257 320 IPR001471 GO:0003700|GO:0006355
Arst5g00828 505 SMART rav1_2 165 227 IPR001471 GO:0003700|GO:0006355
Arst5g00828 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 92 397 - -
Arst5g00828 505 MobiDBLite consensus disorder prediction 1 70 - -
Arst5g00828 505 MobiDBLite consensus disorder prediction 435 470 - -
Arst5g00828 505 ProSiteProfiles AP2/ERF domain profile. 165 221 IPR001471 GO:0003700|GO:0006355
Arst5g00828 505 Pfam AP2 domain 165 213 IPR001471 GO:0003700|GO:0006355
Arst5g00828 505 Pfam AP2 domain 256 305 IPR001471 GO:0003700|GO:0006355
Arst5g00828 505 SUPERFAMILY DNA-binding domain 256 316 IPR016177 GO:0003677
Arst5g00828 505 CDD AP2 165 222 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00828 Arst-Chr5 7365576 7368630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00828 1 505 AP2-EREBP Transcription Factor Family AT4G36920 54.598 1.49e-138 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Arst5g00828 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00828 K09284 - gmx:100801975 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00828 5 7365576 7368630 Arst5g00828 5 7365576 7368630 ECH
Arst5g00828 5 7365576 7368630 Arst1g01374 1 14741340 14746867 PCT