Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00734 ATGGGTGCACCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCGCTCAAAGCTGGAGTAGTCAAACATGGGGCTGGAAAATGGCGCACAATACTTACAGACCCAGAGTTTAGTGCCATTCTGCGCATGCGATCAAATGTAGATCTCAAGGACAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCAGGCAGAAAGCAAAGCTTGCCCTAAAAAAGAACCTACCAATTCCCAAAATTGACTGTAACCACATGGCCATAAGTACTGTAGTTCAACGGGATGAAGTTGCTGATTATAAGCCTCTGGCAATTTCTGGTGGAGCATCACAATCTGCTAATTCAAAAGAACACATATCAAGTGGCAGGTTGGATACTCTCATACTAGAGTCCATTATCAAGTTAAAAGAGCCAAAAGGTTCTGACCGGGCTGCCATTGCTGCTTACATAGAGGATCAATACTCATGTCCTCCAAACCTCAGAAAGTTACTGTCAGCAAAACTGAAGCATATGGTAGCAAGTGGCAAGTTAATGAAGGTAAAGCATAAGTACAGAATTACAGGAAATTCAACAATCTCTGAGAAGAGAAGAGGCTCTTCCTTGTTACTTTTGGAAGGAAGGCCAAAAGATTCCCCCAAATCAGAGAAGACTGATGTCAGCCTCCTTTCAAAATCCCAAATTGATGCAGAGCTATCAAAAATGAAAGGTGTGACAGCTCAAGAGGCAGCGGCTGCAGCTGCAAAAGCAGTTGCAGAAGCTGAAGTTGCCATTGCTGAGGCTGAGGCAGCAGCTAGGGAGGCAGAAGCTGCAGAAGCGGAAGCAGAGGCTGCACGGGTATTTGCAAAAGCAGCAATGAAAGCACTAAAATGCAAAGCGCTTCATATCTGA 888 0.4448 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPIPKIDCNHMAISTVVQRDEVADYKPLAISGGASQSANSKEHISSGRLDTLILESIIKLKEPKGSDRAAIAAYIEDQYSCPPNLRKLLSAKLKHMVASGKLMKVKHKYRITGNSTISEKRRGSSLLLLEGRPKDSPKSEKTDVSLLSKSQIDAELSKMKGVTAQEAAAAAAKAVAEAEVAIAEAEAAAREAEAAEAEAEAARVFAKAAMKALKCKALHI 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00734 295 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
Arst5g00734 295 SMART h15plus2 115 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Arst5g00734 295 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Arst5g00734 295 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Arst5g00734 295 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Arst5g00734 295 CDD SANT_TRF 6 57 - -
Arst5g00734 295 Pfam linker histone H1 and H5 family 125 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Arst5g00734 295 Coils Coil 243 277 - -
Arst5g00734 295 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Arst5g00734 295 Gene3D - 2 59 - -
Arst5g00734 295 SMART sant 4 59 IPR001005 -
Arst5g00734 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Arst5g00734 295 FunFam Telomere repeat-binding factor 1 2 58 - -
Arst5g00734 295 Gene3D - 115 200 IPR036388 -
Arst5g00734 295 SUPERFAMILY "Winged helix" DNA-binding domain 122 197 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00734 Arst-Chr5 6328849 6333395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00734 1 291 Single Myb Histone (SMH) Gene Family AT5G67580 56.610 1.33e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Arst5g00734 Linker_histone 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00734 K09422 - gmx:100796539 388.267