Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00733 ATGGGTGCACCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCGCTCAAAGCTGGAGTAGTCAAACATGGGGCTGGAAAATGGCGCACAATACTTACAGACCCAGAGTTTAGTGCCATTCTGCGCATGCGATCAAATGTAGATCTCAAGGACAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCAGGCAGAAAGCAAAGCTTGCCCTAAAAAAGAACCTACCAATTCCCAAAATTGACTGTAACCACATGGCCATAAGTACTGTAGTTCAACGGGATGAAGTTGCTGATTATAAGCCTCTGGCAATTTCTGGTGGAGCATCACAATCTGCTAATTCAAAAGAACACATATCAAGCAATATGCATTTTGACAGTGGCAGGTTGGATACTCTCATACTAGAGTCCATTATCAAGTTAAAAGAGCCAAAAGGTTCTGACCGGGCTGCCATTGCTGCTTACATAGAGGATCAATACTCATGTCCTCCAAACCTCAGAAAGTTACTGTCAGCAAAACTGAAGCATATGGTAGCAAGTGGCAAGTTAATGAAGGTAAAGCATAAGTACAGAATTACAGGAAATTCAACAATCTCTGAGAAGAGAAGAGGCTCTTCCTTGTTACTTTTGGAAGGAAGGCCAAAAGATTCCCCCAAATCAGAGAAGACTGATGTCAGCCTCCTTTCAAAATCCCAAATTGATGCAGAGCTATCAAAAATGAAAGGTGTGACAGCTCAAGAGGCAGCGGCTGCAGCTGCAAAAGCAGTTGCAGAAGCTGAAGTTGCCATTGCTGAGGCTGAGGCAGCAGCTAGGGAGGCAGAAGCTGCAGAAGCGGAAGCAGAGGCTGCACGGGTATTTGCAAAAGCAGCAATGAAAGCACTAAAATGCAAAGCGCTTCATATCTGA 906 0.4426 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPIPKIDCNHMAISTVVQRDEVADYKPLAISGGASQSANSKEHISSNMHFDSGRLDTLILESIIKLKEPKGSDRAAIAAYIEDQYSCPPNLRKLLSAKLKHMVASGKLMKVKHKYRITGNSTISEKRRGSSLLLLEGRPKDSPKSEKTDVSLLSKSQIDAELSKMKGVTAQEAAAAAAKAVAEAEVAIAEAEAAAREAEAAEAEAEAARVFAKAAMKALKCKALHI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00733 301 Coils Coil 249 283 - -
Arst5g00733 301 FunFam Telomere repeat-binding factor 1 2 58 - -
Arst5g00733 301 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Arst5g00733 301 CDD SANT_TRF 6 57 - -
Arst5g00733 301 Gene3D - 126 206 IPR036388 -
Arst5g00733 301 PANTHER SINGLE MYB HISTONE 4 1 297 IPR044597 GO:0003691
Arst5g00733 301 MobiDBLite consensus disorder prediction 206 223 - -
Arst5g00733 301 SMART h15plus2 124 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Arst5g00733 301 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Arst5g00733 301 Pfam linker histone H1 and H5 family 131 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Arst5g00733 301 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 126 194 IPR005818 GO:0000786|GO:0003677|GO:0006334
Arst5g00733 301 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Arst5g00733 301 SMART sant 4 59 IPR001005 -
Arst5g00733 301 SUPERFAMILY "Winged helix" DNA-binding domain 129 203 IPR036390 -
Arst5g00733 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Arst5g00733 301 Gene3D - 2 59 - -
Arst5g00733 301 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00733 Arst-Chr5 6328849 6333395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00733 1 297 Single Myb Histone (SMH) Gene Family AT5G67580 55.482 2.59e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Arst5g00733 Linker_histone 2.1e-11 CL0123