Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00718 ATGCCGATGTTTCAGCCTTCCAAGAGGGACATGGTAGGTGGGTACGAGGGTGGAGGGGACGGGCAGATTCTAGATCTGGACACTGCCGTGAAGGACGGTGTGTTGGGGGGAGGCGTTGGCGTTGGCGTTGGCGTTGGCGTTGTGGGAGGCATGGCATGCGAGAAATTGGATCTGGGGAAGATGATTGAGGAGCTGGACTTGTCGGAGGTACCAAGCGTGTTCATATGCCCAATCTCTCTGGAAGCAATGCAAGACCCCGTGACACTCTGCACCGGACAAACTTACGAGCGGTCCAACATCCTCAAATGGTTCAACCTGGGTCACTTGACCTGCCCCACTACGATGCAGGAGCTTTGGGATGATTCCGTTACCCCCAACACCACCCTCTACCGCCTCATATACACGTGGTTCTCTCAGAAGTACCTTCTCATGAAGAAGAGGTCGGAGGATGTTCAGGGTAGGGCTTCCGAGCTTCTTGACACGCTCAAGAAGGTCAAGGGTCAGGCTCGAGTCATGGCTCTCAAGGAGCTTCACCAGGTTGTTGCTGCTCACGCCACTGCCCGCAAGACGCTTCTCGATGAAGGTGGTGTCTCTTTAATGTCTTCTTTGCTTGGACCTTTTACTTCCCATGCTGTTGGCTCTGAGGTTATTGGTATTCTTGTTTGCTTGACTCTTGATTCCGATTCCAAGAAGAATCTTATGCAGCCTGCCAAGGTTTCTTTGATGGTGGATATCCTCAACGAGGGCTCTATCGAGACCAAGATTAATTGTACTAGGTTGATTGAGTCTTTGATTGACGATAAGGATCTTAGGTCCGAGCTTATCTCCAGCCATAGCTTGTTGGTTGGCTTGATGAGGCTTGTAAAGGATAAGAGGCACACCAATGGAATCTGCCCTGGCTTGAGCCTTTTAAGAGCAATTTGCTCCCACAAAGACATTCGGCATTTGCTTGTAAGCATCGGTGCTGTTTCGCAATTGGTCGAATTGTTGTCTGCTTTGGAGCCTGATTGTTTGGAATTGGCACTTTCTATTTTGGATTCCTTGGCATCTATACCCGAAGGCAGGCTCGCTTTGAAGAATTGTTCTAATACCATACCAATCATGGTCAAATTGTTGATGAGGATCTCGGAGAATTGCACGCAGTATGCGTTGTCCATCTTGTGGTCTGTCTGCAAGCTTGCACCGGAGGAGTGCTCGTCCGTTGCCGTGGACGCAGGGCTTGCTGCCAAACTCCTCCTTGTGATTCAGAGTGGTTGCAATCCTCTATTGAAACAACAGTCTGCTGAGCTTTTGAAGCTGTGCAGTTTGAATTATTCGGATACAATCTTTATTTCCAAGTGCAAGCTTACAAGAACCATCCTATAA 1365 0.493 MPMFQPSKRDMVGGYEGGGDGQILDLDTAVKDGVLGGGVGVGVGVGVVGGMACEKLDLGKMIEELDLSEVPSVFICPISLEAMQDPVTLCTGQTYERSNILKWFNLGHLTCPTTMQELWDDSVTPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELLDTLKKVKGQARVMALKELHQVVAAHATARKTLLDEGGVSLMSSLLGPFTSHAVGSEVIGILVCLTLDSDSKKNLMQPAKVSLMVDILNEGSIETKINCTRLIESLIDDKDLRSELISSHSLLVGLMRLVKDKRHTNGICPGLSLLRAICSHKDIRHLLVSIGAVSQLVELLSALEPDCLELALSILDSLASIPEGRLALKNCSNTIPIMVKLLMRISENCTQYALSILWSVCKLAPEECSSVAVDAGLAAKLLLVIQSGCNPLLKQQSAELLKLCSLNYSDTIFISKCKLTRTIL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00718 454 SUPERFAMILY ARM repeat 158 439 IPR016024 -
Arst5g00718 454 SUPERFAMILY RING/U-box 64 140 - -
Arst5g00718 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 144 IPR013083 -
Arst5g00718 454 Pfam U-box domain 70 140 IPR003613 GO:0004842|GO:0016567
Arst5g00718 454 CDD RING-Ubox_PUB 71 123 IPR045210 -
Arst5g00718 454 PANTHER WDSAM1 PROTEIN 65 440 IPR045185 GO:0061630
Arst5g00718 454 SMART Ubox_2 73 136 IPR003613 GO:0004842|GO:0016567
Arst5g00718 454 Gene3D - 301 435 IPR011989 -
Arst5g00718 454 Gene3D - 148 300 IPR011989 -
Arst5g00718 454 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00718 Arst-Chr5 6251683 6254181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00718 1 453 U-box Gene Family AT3G49810 73.731 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00718 - - adu:107487639 853.203