Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00670 ATGATGGAAATTGCATCCAGCAACTACTTGGCTGAATTTGGAATAGAAGAATATTCTAGCAGCTTCCAGGAATACCCGATGATGATGAATTCATTTGAAGAAATGCTTGATAAGTTTGAGATGGACATGCAATCTATGTCATCAGCCTACTCTGAAACCAAACCACCACCACATCAACTTCAATCCCCTTTTAACACTGCCATGCCTTCTAGATCCGCCTCTCCATCACCACCCAAACTTATCTCCTTTGAGGCACCGTCTCTTCCTAATTCTTCCAACATTAAGAACCCTAATCTCATGATGGACGACCACATTCACTTCTCTGCTTTCTTCAACCATGATAATCCACCGCATAAGGTCCTTCCCGCCACAGCTAGGAACCCAATCCAAGCTCAGGAGCATGTAATCGCCGAAAGAAAACGCCGGGAAAAGCTCAGCCAGAGGTTCGTCGCTCTTTCCGCCATGGTCCCTGGCCTCAAGAAGATGGACAAGGCTTCAATTTTAGGAGATGCCATAAAATATGTGAAGCAACTACAGGAACGAGTGCAGTTTTTGGAGGAGGAGAAGGCTAGAAAGAAAACTATGGTTGAATCAGGGGTGGCAGTAAAGAGATGTTTCGTGTTTGTTGAAGATGAAGATAATAATGAGAACGAAATTTCAGCAGCAGCAGCATTATTGGATGGAAATTGTAATACACTTCCGGAAATCAAAGCAAGAGTTAGTGGTAAAGACGTACTCATCAGAATCCACTGCCATAAACAAGAGTGCAAGAACAGTAGGGGTGCTCGTGAGGCTGCAATACTCTCCGTATTAGAGAAGCATAATCTCACTGTTCACACAACCACCTCTTTGCCCTTCGGCAATGACACTCTCGATATCACTATTCTCGCTCAGATGAAGAAGGAATGCTCCATTAGGACAAAGGATCTAGTAGGAAGCCTACGGGTGGCATTGACACAATTCAGTTGA 969 0.4417 MMEIASSNYLAEFGIEEYSSSFQEYPMMMNSFEEMLDKFEMDMQSMSSAYSETKPPPHQLQSPFNTAMPSRSASPSPPKLISFEAPSLPNSSNIKNPNLMMDDHIHFSAFFNHDNPPHKVLPATARNPIQAQEHVIAERKRREKLSQRFVALSAMVPGLKKMDKASILGDAIKYVKQLQERVQFLEEEKARKKTMVESGVAVKRCFVFVEDEDNNENEISAAAALLDGNCNTLPEIKARVSGKDVLIRIHCHKQECKNSRGAREAAILSVLEKHNLTVHTTTSLPFGNDTLDITILAQMKKECSIRTKDLVGSLRVALTQFS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00670 322 Pfam Helix-loop-helix DNA-binding domain 132 179 IPR011598 GO:0046983
Arst5g00670 322 CDD bHLH_AtNAI1_like 131 203 - -
Arst5g00670 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 193 IPR036638 GO:0046983
Arst5g00670 322 Coils Coil 168 195 - -
Arst5g00670 322 MobiDBLite consensus disorder prediction 46 77 - -
Arst5g00670 322 Gene3D - 130 203 IPR036638 GO:0046983
Arst5g00670 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Arst5g00670 322 PANTHER BHLH TRANSCRIPTION FACTOR 26 320 - -
Arst5g00670 322 SMART finulus 135 184 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00670 Arst-Chr5 5682449 5683768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00670 125 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.485 9.26e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst5g00670 HLH 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00670 - - aip:107642660 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00670 5 5682449 5683768 Arst5g00670 5 5682449 5683768 ECH
Arst5g00670 5 5682449 5683768 Arst1g01602 1 24164890 24167825 PCT