Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00657 ATGACCAAACCACCCTCCGCCTTCGACGCTCTCATGTCCGGTGCTCGCGCCGCTGCCGCCGCCGCCGCCGCTGCCAAGAAGAAGAAATCCGAGCGGTCGCAGCAACCAACTGCTTCTTCTCCCAAGAAGCGAAAACCTTCATCCTCCACTCTCCCCACTCCAACCTCCACGCTAAACCCTAATGAAGAACCGGAGAAAGAAGGCCCTCCTCCGACCAAGACTCGCCACGTGTCTTCTCCATCTGCCTTGCAGGAGCTGAAGAAGCGCGTTCCGCAGCTGACGGCGAAGCCTTCGAAATTCGATCCTAGCTCAGTGGCTTGTTGGGAGAAGGGCACGCCTGTGCCGTTCTCGTTACTGGCGTTGGCGCTTGACATGATTTCTCTGGAGCCTGGCAGAATCAAGATGACAGATATTGCGTGCAATTTGATGAAGACTGTGATATACTCTACCCCTGAGGATCTTGTGCCTCTGATTTATCTCTTGGCGAAGAGGCTTGCTCCGGCGCATGAAGGGCTGGAATTGGGAATTGGCGAGACTTCCATTATTAAGGCACTTGCTGAGGCAACTGGAAGAACTGAATCCAAAATCAAGAAGCTGTATCAGGTGACTCTTTTGGGTTTTGTAGTCTTTGACTGTCTCTTTCCCAATGGGGATTGTTTGATGAGTTGCCATTTTGCTTTGACGAGGTTCCGTCTTATTGCCAAGGAATCTGGAAGAGACAGTCAAATGAAGAAAAAGAATCATATAAAGGCACTTCTTGTTGCTGCAACTGACTGCGAACCTAAATATCTTATCCGTTTTCTACAGGGAAAATTGCGGATTGGTGTGGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCAGCAGTACAGAGTGAAGAACATTCTAAACCACCTGCTGGTATTAAGTCTCCTTTGGAAGAGGCTGTAAAAATTGTTAAACAAGTCTATTCTGTTCTTCCTGTCTACGACGAAATAGTATCTGCACTTCTTACACATGGTGTATGGAAACTTCCATCAACGTGTAATTTTACTCCTGGTATTCCAGTTGGACCTATGCTGTCAAAACCGAGGAAGGGTATCTCTGATATTCTAAATTCATTGCAAGATGTGCAGTTTACTTGTGAATACAAGTATGATGGAGAGCGTGCCCAGGTACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCTGAGCGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCAATTTCAAGGTTAAAGAAATCAACTGTATCATCATTTGTTCTTGATTGTGAAATTGTTGGATATAATCGTGAGAAACAGACCATCCGTCCTTTCCAGGATCTTAGTACTCGGCCTCATAAAAATGTATCTGTGGATAATATAAAGGTTGACGTCTGCATATTTGCTTTTGATATACTGTATCTTAATGGCCGAGTACTTCTTCAGGATAACCTGAAAATCCGTAGAGAGCATCTTTATGCCTCTTTTGAAGAAGAAACTGGAGTTTTTCAGTATGCAACGGCAATAACATCAAATGACACTGAGGAAATTCAGAAATTTCTCGACAAAGCTGTTGGATCAAGCTGTGAGGGATTAATCATTAAAACTTTAAATGAAGATTCTACATATGAACCTTCCAATCGGTCAAACAATTGGCTAAAACTGAAGAAAGATTATCTGGATAACATAGGGGACTCGATGGATTTGGTACCTATAGCTGCATTCCACGGACGTGGGAAACGTACAGGAGTCTATGGTGCTTTTCTTCTTGCTTGCTATGACTACAATAACGAAGAATTTCAAAGTATTTGTAAGATTGGAACGGGATTTACTGAAGAAGTGCTCGAAGAGCGTTCTAAAAGTCTTGGTTCTCAAGTGATTCCTGGGCCAAAGCGATACTATCGATATGGAGATAAAATGAAGCCTGATGTCTGGTTTGAAGCTAGCGAGGTATGGGAGGTGAAAGCTGCAGATTTGACCATCAGCCCAGTTCACCGAGCTGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTCCCACGGCTAGTTCGAGTTCGACCTGACAAAACACCCGAGCAGGCCTCATTATCTGAGCAGGTTGCTGAGATGTATAATGTTCAAAAAGCCACTCAAACTAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAACAACCAAACAGGATGGTAGTGAGTCACCAAAAAAACAGATTTGCAGCGAAGACGAAGATGAAGACGAAGACGAAGTCGCAGATGAAGATGTAGATGTAGATGTAATGCATATGAAGATGAAGATAAGTGAGCTGCTGTCATACACTATTGTACCAATAGAATCTCAGCATTTTTGCTGA 2355 0.4361 MTKPPSAFDALMSGARAAAAAAAAAKKKKSERSQQPTASSPKKRKPSSSTLPTPTSTLNPNEEPEKEGPPPTKTRHVSSPSALQELKKRVPQLTAKPSKFDPSSVACWEKGTPVPFSLLALALDMISLEPGRIKMTDIACNLMKTVIYSTPEDLVPLIYLLAKRLAPAHEGLELGIGETSIIKALAEATGRTESKIKKLYQVTLLGFVVFDCLFPNGDCLMSCHFALTRFRLIAKESGRDSQMKKKNHIKALLVAATDCEPKYLIRFLQGKLRIGVAEQTLLAALGQAAVQSEEHSKPPAGIKSPLEEAVKIVKQVYSVLPVYDEIVSALLTHGVWKLPSTCNFTPGIPVGPMLSKPRKGISDILNSLQDVQFTCEYKYDGERAQVHYMENGSVEIYSRNAERNTGKFPDVVAAISRLKKSTVSSFVLDCEIVGYNREKQTIRPFQDLSTRPHKNVSVDNIKVDVCIFAFDILYLNGRVLLQDNLKIRREHLYASFEEETGVFQYATAITSNDTEEIQKFLDKAVGSSCEGLIIKTLNEDSTYEPSNRSNNWLKLKKDYLDNIGDSMDLVPIAAFHGRGKRTGVYGAFLLACYDYNNEEFQSICKIGTGFTEEVLEERSKSLGSQVIPGPKRYYRYGDKMKPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRPDKTPEQASLSEQVAEMYNVQKATQTKEKEKEKEKETTKQDGSESPKKQICSEDEDEDEDEVADEDVDVDVMHMKMKISELLSYTIVPIESQHFC 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00657 784 Gene3D - 362 560 - -
Arst5g00657 784 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 344 562 - -
Arst5g00657 784 Gene3D - 561 724 IPR012340 -
Arst5g00657 784 Gene3D - 91 354 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Arst5g00657 784 ProSitePatterns ATP-dependent DNA ligase signature 2. 530 556 IPR016059 GO:0003909
Arst5g00657 784 Pfam ATP dependent DNA ligase C terminal region 581 692 IPR012309 GO:0003910|GO:0006281|GO:0006310
Arst5g00657 784 CDD OBF_DNA_ligase_I 564 708 - -
Arst5g00657 784 ProSiteProfiles ATP-dependent DNA ligase family profile. 458 594 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Arst5g00657 784 Gene3D DNA ligase/mRNA capping enzyme 381 506 - -
Arst5g00657 784 Pfam ATP dependent DNA ligase domain 352 556 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Arst5g00657 784 CDD Adenylation_DNA_ligase_I_Euk 341 559 - -
Arst5g00657 784 SUPERFAMILY Nucleic acid-binding proteins 564 710 IPR012340 -
Arst5g00657 784 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 97 342 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Arst5g00657 784 Coils Coil 709 729 - -
Arst5g00657 784 MobiDBLite consensus disorder prediction 712 757 - -
Arst5g00657 784 FunFam DNA ligase 381 506 - -
Arst5g00657 784 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 26 726 - -
Arst5g00657 784 MobiDBLite consensus disorder prediction 742 756 - -
Arst5g00657 784 Pfam DNA ligase N terminus 115 285 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Arst5g00657 784 MobiDBLite consensus disorder prediction 1 85 - -
Arst5g00657 784 MobiDBLite consensus disorder prediction 712 741 - -
Arst5g00657 784 FunFam DNA ligase 561 721 - -
Arst5g00657 784 MobiDBLite consensus disorder prediction 34 62 - -
Arst5g00657 784 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 376 384 IPR016059 GO:0003909
Arst5g00657 784 NCBIfam ATP-dependent DNA ligase 173 707 IPR000977 GO:0003910|GO:0005524|GO:0071897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00657 Arst-Chr5 5526468 5533469 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00657 5 711 Core DNA Replication Machinery Family AT1G08130 62.466 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00657 K10747 - gmx:100783155 965.296