Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00652 ATGCCACCAGTTCCACTTGCTCCCTACCCAACACCATCGGTTCCATATACTACGCCTCCATCAAATGGTGCACAGAGTCAACTTGTGTGTTCCGGTTGCAGAAACCTACTGATGTATCCAGTTGGAGCCACGTCAGTGTGTTGTGCAGTTTGCAATGCAGTGACAGCAGTGCCACCACCTGGCACAGAAATGGCCCAGTTAATTTGTGGAGGATGTCACACTTTACTGATGTACATCCGCGGAGCGACAAGTGTACAATGCTCTTGTTGCCACACCGTCAATCTAGCACTGGAAGCAAATCAAGTGGCGCATGTTAATTGTGGCAACTGTAGGATGTTGCTGATGTACCAATATGGAGCAAGATCCGTGAAATGTGCGGTCTGCAGTTTTGTAACCTCTGTTGGGGACTCATCAACAAGCACCACAGAGCAGAAATTCAGCACTTGA 447 0.4855 MPPVPLAPYPTPSVPYTTPPSNGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCSFVTSVGDSSTSTTEQKFST 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00652 148 PANTHER PROTEIN LSD1 17 57 IPR040319 -
Arst5g00652 148 Pfam LSD1 zinc finger 107 131 IPR005735 -
Arst5g00652 148 Pfam LSD1 zinc finger 69 93 IPR005735 -
Arst5g00652 148 Pfam LSD1 zinc finger 30 54 IPR005735 -
Arst5g00652 148 NCBIfam zinc finger domain, LSD1 subclass 104 133 IPR005735 -
Arst5g00652 148 NCBIfam zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Arst5g00652 148 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Arst5g00652 148 SUPERFAMILY Multiheme cytochromes 30 128 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00652 Arst-Chr5 5471950 5474363 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Arst5g00652 zf-LSD1 8.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00652 - - csav:115716485 261.922