Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00623 ATGGCGCTCCATATTTTGTGTGGATTTTTTCTTACCACCTTTGTTTTCATGCAAACACTGGCAGATACTTCTTCATCGTGCACCGATTGCTTTGTAAATTCAAGGGCAACATATTACCCCCATTCTGAACAAAATGGGACAGCCAACGGTGCATGCGGCTTTGGTTCCTTTGGTGCTATGGTGAACGGCGGCGACGTATCTGCCGCTTCTAGTCTTTATCGAAATGGCGTTGGATGTGGCGCCTGTTACCAGGTGAGGTGTACGGACGGTGGTTATTGCTCAGATAACGGTGTGACAGTGGTTATAACAGACGAAGGGTCAAGTGATAACACGGATTTCATTCTCAGCGAACATGCCTTTGATCGGATGGCTCAGACCACTGATGCAGCTGCTTATCTCTTAGCCCTTGGCGTTCTTCATATTCAGTATACACGGGTTGCATGCAATTATCCACACGAGAACATAACATTCAAGATAGATGAGAGTAGCAGCAACCCTAATTACTTGGCATTTGTGATTTGGTATCAACAGGGAATTAGAGACATAACTGCTGTCCAGCTTTGTGAGGTATACTATATATATACACATACATTCTCCTGCTTCCAAATTATTCTGCTGAATCAAACTGAGAACTTTGAGTGCAAGCTGCTAGATCGGAGCCATGGTGCAGTGTGGACTAGCACCTCTCCTCCAAGTGGACCATTGTCTATAAGGATGTTGTTTAGTGATGAAGATGAACAAAATGAAGAATGGGTTGTTCCTCCTAATAACTTACCAGCAGATTGGAAGCCTGGTCAAATATATAACTCTGGGATACAAGTTAACTTTTAA 831 0.4356 MALHILCGFFLTTFVFMQTLADTSSSCTDCFVNSRATYYPHSEQNGTANGACGFGSFGAMVNGGDVSAASSLYRNGVGCGACYQVRCTDGGYCSDNGVTVVITDEGSSDNTDFILSEHAFDRMAQTTDAAAYLLALGVLHIQYTRVACNYPHENITFKIDESSSNPNYLAFVIWYQQGIRDITAVQLCEVYYIYTHTFSCFQIILLNQTENFECKLLDRSHGAVWTSTSPPSGPLSIRMLFSDEDEQNEEWVVPPNNLPADWKPGQIYNSGIQVNF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00623 276 Pfam Lytic transglycolase 69 143 IPR009009 -
Arst5g00623 276 PANTHER EXPANSIN-B3 23 273 - -
Arst5g00623 276 CDD DPBB_EXLB_N 32 148 - -
Arst5g00623 276 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Arst5g00623 276 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Arst5g00623 276 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Arst5g00623 276 Pfam Expansin C-terminal domain 155 247 IPR007117 -
Arst5g00623 276 SUPERFAMILY Barwin-like endoglucanases 25 152 IPR036908 -
Arst5g00623 276 Gene3D - 16 149 IPR036908 -
Arst5g00623 276 Gene3D - 151 274 IPR036749 -
Arst5g00623 276 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 270 IPR007117 -
Arst5g00623 276 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Arst5g00623 276 SUPERFAMILY PHL pollen allergen 154 270 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00623 Arst-Chr5 5222857 5225955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00623 4 272 Expansin Gene Family AT4G17030 39.259 8.19e-58 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00623 - - ccaj:109799868 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00623 5 5222857 5225955 Arst1g01694 1 29776047 29778112 PCT