Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00607 ATGCATTCCAACACTGTTCCTGTTGCCTCCAGAACTCGTTCAAGAAAGACCGCCACAACCACCATGAGCCTGAGTAGCTCCGACGATGACGAAGTCGTCGTTAAAGGGGAAACTCCCCCGAAACCTCAACCTGAACGCGGCAGCGCAGAAGGCAGCGGTAACAGAGACGGCGAGAATGTGAAGGAGGGCGAGAACAGAGAAGATATAACGAGGAAAAGAAGAAAATTTGGGGTTGACATTTTGATTGACCAGGGTCCCATCCCCGATGGTAAGAGTGTTGCACACAGGACTCGTTCCCATTTCCCGAAGAGCAAGAAGCACCTCCTTTTTGGGACTTTTAGTCAACCAATTTGTCTTGCTGATGATGATGATGATGAAGAACAAGAACAAGAACAAGAAAAGGAAGAAGGGCAACAACCTGGGAAGCAAGGTGAAGATGATGAAGAAGAACATGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACGACGACGATGACGACAACGACGACGATGACGACGAGTCTCTTTATGAATCAGAAGAAACTGATTTGGAGGAGGAGGATGATGATGATGACGACGACTACAGCGTAGAGAGAGATGCATGTATGAACAATGTGGCCAATTTCGAAGGGAAGAAGCAAAAGCGGAAGCGTGTTGATGTGGCTAGCATGTTAAGGGATATGATGTTTGGCAAGGGAGAGGTGCCTTTGCTGGAGTCTGTGGAAGAAGAATCAGGTGCAACTGTGGTGACCATGGACGTGCCAACAAGGTCCCCTTTCAACAGTGAGAAGCACGCGCCACCGGAGAAATCGACTGAGCAGGAAGTGCTGGATGCTATTTGGGCTGAGATGGAGCGTGGCTTCAGCTCTGATCCTTTTGAAGAGGAGCAGGGTTCTAATGAATTCAAATGCAGAGGTTCCAAGAGGGAAAAGGGATCTGCTTTTGAATTTACAAGGAAGAGAGAAGATCAAGATCTAAAAGGGCTTGGTGGGGAGTTTCAGGATTGTGTTGCCCAAGAGAAGGGTAAATTGTCTAGCAAGTCATGCATTGAGGGGGGAAATTCATGTGTGGATTTTCCTTTCAAGTTTACTTTTTTAACTAAGGAACCGCCAGCGGAGAAATCCCAAGATGAGAAAGAAATAGATACGATCTGGTCTGAGATGGAGCTTGGTCTTCATGTTATCCAACAAGACTCTGCTTCTGCTCCTCAGCAGGGTGAAAATAATGCTAATTCGGATCGTGATCAATTTCCGGTGGAAGGTGATGCTAACACACCCCCTCTTTTTCGCTGTCGAAAAGGGGAACACAATCTTGTTCTTGATGAGGAAATTGGGCTTATCTGTAAATATTGCTTGCATGTGGCACTGGAGATCAAGAATTGGGTTCCTCCTTTTGTTGAAAGTCCATGGGAAAAATCTGACAGGAGAGATTATTATTATTATGGGGATGATGTTGACCGGTCTGTCTTGGATGAGCTTCATGATCGAACTTCTTGGAGTGATGATTATAACCTTGGTAATCACAAGGGGACAGTATGGGATATGATTCCTGGAGTGAAGAAGACTATGTATCCTCATCAATGCGAAGCTTTTGAATTTCTCTGGAGTCATTTAGCTGGTGGAATTTTTCTTGATCAGCTTAAAGAAGAAAACACTGGAAATGGATGCGTTGTATCTCATGCTCCTGGCACGGGGAAAACCCGTCTTGCTATTGTATTTATCCAGGCTTACATGAAGTTATATCCAGCATGCTCACCAATGATTATTGCTCCTAAAAGCATGCTCCTTACATGGGAAGAGGAGTTCAAACTATGGAAGGTTGACATTCCCTTTCACAATGTGAACAACTCTGAATACTCTGGCAACGAGAATGAAACAGCTCGTAATCTTATCAATAAATTTGGTCGTAATGCTTCGACTCAGGCAGCAAAGCGGAATTGTCGTACAGCTAAGTTCTATTCCTGGAAGCTTGGCAAAAGCATCTTGGGAATTAGCTACAAATTGTTCGAGCTACTTACCCGGCAGGGCTCCCGGGACAAGGTCCTGAGGAAGTTCCTTCTTGAACAGCCTAGTTTGCTAGTTCTTGACGAAGGGCACACTCCCCGCAATAAGACATCTGCTGTATGGAAATCCGTCTCTGAAATTGAAACAAAGAGACGCATCATCCTTTCCGGAACTCCCTTTCAAAACAACTTTAGGGAGCTATACACCACACTGTGCTTGGCAAGGCCTAAATTTGCTGATTTGAATCCAAGAGATGAACATAGAGGGAGATGGCAATATCTTGTCAATTCATATGGAAAGGTTACTGATTCCAGTAGAAAATTAAAGATATTGAAAGAGATCCGAGAAATGATCCAACCTTTTGTTCATGTATACAAGGGAACCATACTGCAAGACAGTCTCCCAGGGCTGAGGCAGTTGGTAGTCATATTGAAGCCAACCCAGTTGCAGGAGAAATTGCTTCAAGATATTAAGAAGAGATTTGATAATGTGCTTAAATTAGAATACGAAGAGTCTGTAGCAGCGTTTCATCCTTCTCTTTGCGAAATAGCTGAAGACAAGGAGAAGATACAAAAGTGTAGATTGAACCCCAACGAAAGTGCCAAAACAAAGTTCTTAATGGAACTTATCAGGATCAGTGGAATTTTCAATGAAAAAGTTTTGATTTTTAGTCAATTCATTGAACCTTTGAAGCTTCTACTGAGCCAGCTGAAGCAACATTTTAGTTGGACCGAAGGAAGAGAGGTGTTACAAATGCATGGAAAACAAGAAGCAAAGCTTCGACAGGCTTCAATCCACACTTTCAATGATCCGAACAGCAAAGTAAGGGTAATGCTAGCATCAACCAAGGCTTGTTACGAAGGTATCAGTTTGGTAGGTGCCTCGAGGGTTGTTTTGCTTGATGTTGTGTGGAATCCCTCGGTTGAGAAGCAAGCAATAAGCCGTGCTTATAGGCTCGGCCAAAAGAAGCTCGTGTTTACTTACCATTTGATCACTAAGGGGACAACGGACGAGAAAAAATGTGGTCGACAAGCTGTGAAGGACCAGTTGTCAGAGTTCGTGTTCTTTCATTCCGAAGGTGGGGCTCAAAATCGTCAACTCTTTTCATCCGCTGAATTGGAAGATAAAATTCTGGAGCAGATCATTGAGCAAGAAAAGTTCAGACACATAATTGAAAAAGTAGCTATTAAGAAACCAAATCTACTTTGA 3222 0.4401 MHSNTVPVASRTRSRKTATTTMSLSSSDDDEVVVKGETPPKPQPERGSAEGSGNRDGENVKEGENREDITRKRRKFGVDILIDQGPIPDGKSVAHRTRSHFPKSKKHLLFGTFSQPICLADDDDDEEQEQEQEKEEGQQPGKQGEDDEEEHVEEEEEEEEEEDDDDDDDDNDDDDDESLYESEETDLEEEDDDDDDDYSVERDACMNNVANFEGKKQKRKRVDVASMLRDMMFGKGEVPLLESVEEESGATVVTMDVPTRSPFNSEKHAPPEKSTEQEVLDAIWAEMERGFSSDPFEEEQGSNEFKCRGSKREKGSAFEFTRKREDQDLKGLGGEFQDCVAQEKGKLSSKSCIEGGNSCVDFPFKFTFLTKEPPAEKSQDEKEIDTIWSEMELGLHVIQQDSASAPQQGENNANSDRDQFPVEGDANTPPLFRCRKGEHNLVLDEEIGLICKYCLHVALEIKNWVPPFVESPWEKSDRRDYYYYGDDVDRSVLDELHDRTSWSDDYNLGNHKGTVWDMIPGVKKTMYPHQCEAFEFLWSHLAGGIFLDQLKEENTGNGCVVSHAPGTGKTRLAIVFIQAYMKLYPACSPMIIAPKSMLLTWEEEFKLWKVDIPFHNVNNSEYSGNENETARNLINKFGRNASTQAAKRNCRTAKFYSWKLGKSILGISYKLFELLTRQGSRDKVLRKFLLEQPSLLVLDEGHTPRNKTSAVWKSVSEIETKRRIILSGTPFQNNFRELYTTLCLARPKFADLNPRDEHRGRWQYLVNSYGKVTDSSRKLKILKEIREMIQPFVHVYKGTILQDSLPGLRQLVVILKPTQLQEKLLQDIKKRFDNVLKLEYEESVAAFHPSLCEIAEDKEKIQKCRLNPNESAKTKFLMELIRISGIFNEKVLIFSQFIEPLKLLLSQLKQHFSWTEGREVLQMHGKQEAKLRQASIHTFNDPNSKVRVMLASTKACYEGISLVGASRVVLLDVVWNPSVEKQAISRAYRLGQKKLVFTYHLITKGTTDEKKCGRQAVKDQLSEFVFFHSEGGAQNRQLFSSAELEDKILEQIIEQEKFRHIIEKVAIKKPNLL 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00607 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 516 792 IPR027417 -
Arst5g00607 1073 Coils Coil 142 165 - -
Arst5g00607 1073 MobiDBLite consensus disorder prediction 247 276 - -
Arst5g00607 1073 Gene3D - 806 1069 IPR027417 -
Arst5g00607 1073 MobiDBLite consensus disorder prediction 403 422 - -
Arst5g00607 1073 Pfam SNF2-related domain 543 849 IPR000330 GO:0005524|GO:0140658
Arst5g00607 1073 Gene3D - 505 793 IPR038718 -
Arst5g00607 1073 MobiDBLite consensus disorder prediction 403 418 - -
Arst5g00607 1073 Pfam Helicase conserved C-terminal domain 874 991 IPR001650 -
Arst5g00607 1073 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 875 1073 IPR001650 -
Arst5g00607 1073 MobiDBLite consensus disorder prediction 1 203 - -
Arst5g00607 1073 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 11 1065 IPR044567 GO:0080188
Arst5g00607 1073 MobiDBLite consensus disorder prediction 119 133 - -
Arst5g00607 1073 CDD SF2_C_SNF 871 1002 - -
Arst5g00607 1073 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 550 748 IPR014001 -
Arst5g00607 1073 MobiDBLite consensus disorder prediction 1 28 - -
Arst5g00607 1073 SMART ultradead3 522 758 IPR014001 -
Arst5g00607 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 691 1026 IPR027417 -
Arst5g00607 1073 SMART helicmild6 902 991 IPR001650 -
Arst5g00607 1073 MobiDBLite consensus disorder prediction 51 79 - -
Arst5g00607 1073 MobiDBLite consensus disorder prediction 147 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00607 Arst-Chr5 4940819 4945215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00607 867 1046 RAD5 or RAD16-like Gene Family AT5G43530 36.612 2.43e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst5g00607 SNF2_N 5e-22 CL0023