Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00606 ATGCATTCCAACACTGTTCCTGTTGCCTCCAGAACTCGTTCAAGAAAGACCGCCACAACCACCATGAGCCTGAGTAGCTCCGACGATGACGAAGTCGTCGTTAAAGGGGAAACTCCCCCGAAACCTCAACCTGAACGCGGCAGCGCAGAAGGCAGCGGTAACAGAGACGGCGAGAATGTGAAGGAGGGCGAGAACAGAGAAGATATAACGAGGAAAAGAAGAAAATTTGGGGTTGACATTTTGATTGACCAGGGTCCCATCCCCGATGGTAAGAGTGTTGCACACAGGACTCGTTCCCATTTCCCGAAGAGCAAGAAGCACCTCCTTTTTGGGACTTTTAGTCAACCAATTTGTCTTGCTGATGATGATGATGATGAAGAACAAGAACAAGAACAAGAAAAGGAAGAAGGGCAACAACCTGGGAAGCAAGGTGAAGATGATGAAGAAGAACATGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACGACGACGATGACGACAACGACGACGATGACGACGAGTCTCTTTATGAATCAGAAGAAACTGATTTGGAGGAGGAGGATGATGATGATGACGACGACTACAGCGTAGAGAGAGATGCATGTATGAACAATGTGGCCAATTTCGAAGGGAAGAAGCAAAAGCGGAAGCGTGTTGATGTGGCTAGCATGTTAAGGGATATGATGTTTGGCAAGGGAGAGGTGCCTTTGCTGGAGTCTGTGGAAGAAGAATCAGGTGCAACTGTGGTGACCATGGACGTGCCAACAAGGTCCCCTTTCAACAGTGAGAAGCACGCGCCACCGGAGAAATCGACTGAGCAGGAAGTGCTGGATGCTATTTGGGCTGAGATGGAGCGTGGCTTCAGCTCTGATCCTTTTGAAGAGGAGCAGGGTTCTAATGAATTCAAATGCAGAGGTTCCAAGAGGGAAAAGGGATCTGCTTTTGAATTTACAAGGAAGAGAGAAGATCAAGATCTAAAAGGGCTTGGTGGGGAGTTTCAGGATTGTGTTGCCCAAGAGAAGGGTAAATTGTCTAGCAAGTCATGCATTGAGGGGGGAAATTCATGTGTGGATTTTCCTTTCAAGTTTACTTTTTTAACTAAGGAACCGCCAGCGGAGAAATCCCAAGATGAGAAAGAAATAGATACGATCTGGTCTGAGATGGAGCTTGGTCTTCATGTTATCCAACAAGACTCTGCTTCTGCTCCTCAGGGTGAAAATAATGCTAATTCGGATCGTGATCAATTTCCGGTGGAAGGTGATGCTAACACACCCCCTCTTTTTCGCTGTCGAAAAGGGGAACACAATCTTGTTCTTGATGAGGAAATTGGGCTTATCTGTAAATATTGCTTGCATGTGGCACTGGAGATCAAGAATTGGGTTCCTCCTTTTGTTGAAAGTCCATGGGAAAAATCTGACAGGAGAGATTATTATTATTATGGGGATGATGTTGACCGGTCTGTCTTGGATGAGCTTCATGATCGAACTTCTTGGAGTGATGATTATAACCTTGGTAATCACAAGGGGACAGTATGGGATATGATTCCTGGAGTGAAGAAGACTATGTATCCTCATCAATGCGAAGCTTTTGAATTTCTCTGGAGTCATTTAGCTGGTGGAATTTTTCTTGATCAGCTTAAAGAAGAAAACACTGGAAATGGATGCGTTGTATCTCATGCTCCTGGCACGGGGAAAACCCGTCTTGCTATTGTATTTATCCAGGCTTACATGAAGTTATATCCAGCATGCTCACCAATGATTATTGCTCCTAAAAGCATGCTCCTTACATGGGAAGAGGAGTTCAAACTATGGAAGGTTGACATTCCCTTTCACAATGTGAACAACTCTGAATACTCTGGCAACGAGAATGAAACAGCTCGTAATCTTATCAATAAATTTGGTCGTAATGCTTCGACTCAGGCAGCAAAGCGGAATTGTCGTACAGCTAAGTTCTATTCCTGGAAGCTTGGCAAAAGCATCTTGGGAATTAGCTACAAATTGTTCGAGCTACTTACCCGGCAGGGCTCCCGGGACAAGGTCCTGAGGAAGTTCCTTCTTGAACAGCCTAGTTTGCTAGTTCTTGACGAAGGGCACACTCCCCGCAATAAGACATCTGCTGTATGGAAATCCGTCTCTGAAATTGAAACAAAGAGACGCATCATCCTTTCCGGAACTCCCTTTCAAAACAACTTTAGGGAGCTATACACCACACTGTGCTTGGCAAGGCCTAAATTTGCTGATTTGAATCCAAGAGATGAACATAGAGGGAGATGGCAATATCTTGTCAATTCATATGGAAAGGTTACTGATTCCAGTAGAAAATTAAAGATATTGAAAGAGATCCGAGAAATGATCCAACCTTTTGTTCATGTATACAAGGGAACCATACTGCAAGACAGTCTCCCAGGGCTGAGGCAGTTGGTAGTCATATTGAAGCCAACCCAGTTGCAGGAGAAATTGCTTCAAGATATTAAGAAGAGATTTGATAATGTGCTTAAATTAGAATACGAAGAGTCTGTAGCAGCGTTTCATCCTTCTCTTTGCGAAATAGCTGAAGACAAGGAGAAGATACAAAAGTGTAGATTGAACCCCAACGAAAGTGCCAAAACAAAGTTCTTAATGGAACTTATCAGGATCAGTGGAATTTTCAATGAAAAAGTTTTGATTTTTAGTCAATTCATTGAACCTTTGAAGCTTCTACTGAGCCAGCTGAAGCAACATTTTAGTTGGACCGAAGGAAGAGAGGTGTTACAAATGCATGGAAAACAAGAAGCAAAGCTTCGACAGGCTTCAATCCACACTTTCAATGATCCGAACAGCAAAGTAAGGGTAATGCTAGCATCAACCAAGGCTTGTTACGAAGGTATCAGTTTGGTAGGTGCCTCGAGGGTTGTTTTGCTTGATGTTGTGTGGAATCCCTCGGTTGAGAAGCAAGCAATAAGCCGTGCTTATAGGCTCGGCCAAAAGAAGCTCGTGTTTACTTACCATTTGATCACTAAGGGGACAACGGACGAGAAAAAATGTGGTCGACAAGCTGTGAAGGACCAGTTGTCAGAGTTCGTGTTCTTTCATTCCGAAGGTGGGGCTCAAAATCGTCAACTCTTTTCATCCGCTGAATTGGAAGATAAAATTCTGGAGCAGATCATTGAGCAAGAAAAGTTCAGACACATAATTGAAAAAGTAGCTATTAAGAAACCAAATCTACTTTGA 3219 0.4399 MHSNTVPVASRTRSRKTATTTMSLSSSDDDEVVVKGETPPKPQPERGSAEGSGNRDGENVKEGENREDITRKRRKFGVDILIDQGPIPDGKSVAHRTRSHFPKSKKHLLFGTFSQPICLADDDDDEEQEQEQEKEEGQQPGKQGEDDEEEHVEEEEEEEEEEDDDDDDDDNDDDDDESLYESEETDLEEEDDDDDDDYSVERDACMNNVANFEGKKQKRKRVDVASMLRDMMFGKGEVPLLESVEEESGATVVTMDVPTRSPFNSEKHAPPEKSTEQEVLDAIWAEMERGFSSDPFEEEQGSNEFKCRGSKREKGSAFEFTRKREDQDLKGLGGEFQDCVAQEKGKLSSKSCIEGGNSCVDFPFKFTFLTKEPPAEKSQDEKEIDTIWSEMELGLHVIQQDSASAPQGENNANSDRDQFPVEGDANTPPLFRCRKGEHNLVLDEEIGLICKYCLHVALEIKNWVPPFVESPWEKSDRRDYYYYGDDVDRSVLDELHDRTSWSDDYNLGNHKGTVWDMIPGVKKTMYPHQCEAFEFLWSHLAGGIFLDQLKEENTGNGCVVSHAPGTGKTRLAIVFIQAYMKLYPACSPMIIAPKSMLLTWEEEFKLWKVDIPFHNVNNSEYSGNENETARNLINKFGRNASTQAAKRNCRTAKFYSWKLGKSILGISYKLFELLTRQGSRDKVLRKFLLEQPSLLVLDEGHTPRNKTSAVWKSVSEIETKRRIILSGTPFQNNFRELYTTLCLARPKFADLNPRDEHRGRWQYLVNSYGKVTDSSRKLKILKEIREMIQPFVHVYKGTILQDSLPGLRQLVVILKPTQLQEKLLQDIKKRFDNVLKLEYEESVAAFHPSLCEIAEDKEKIQKCRLNPNESAKTKFLMELIRISGIFNEKVLIFSQFIEPLKLLLSQLKQHFSWTEGREVLQMHGKQEAKLRQASIHTFNDPNSKVRVMLASTKACYEGISLVGASRVVLLDVVWNPSVEKQAISRAYRLGQKKLVFTYHLITKGTTDEKKCGRQAVKDQLSEFVFFHSEGGAQNRQLFSSAELEDKILEQIIEQEKFRHIIEKVAIKKPNLL 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00606 1072 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 874 1072 IPR001650 -
Arst5g00606 1072 Coils Coil 142 165 - -
Arst5g00606 1072 CDD SF2_C_SNF 870 1001 - -
Arst5g00606 1072 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 11 1064 IPR044567 GO:0080188
Arst5g00606 1072 MobiDBLite consensus disorder prediction 247 276 - -
Arst5g00606 1072 MobiDBLite consensus disorder prediction 403 422 - -
Arst5g00606 1072 Pfam SNF2-related domain 542 848 IPR000330 GO:0005524|GO:0140658
Arst5g00606 1072 MobiDBLite consensus disorder prediction 403 417 - -
Arst5g00606 1072 Pfam Helicase conserved C-terminal domain 873 990 IPR001650 -
Arst5g00606 1072 Gene3D - 805 1068 IPR027417 -
Arst5g00606 1072 Gene3D - 504 792 IPR038718 -
Arst5g00606 1072 SMART helicmild6 901 990 IPR001650 -
Arst5g00606 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 791 IPR027417 -
Arst5g00606 1072 SMART ultradead3 521 757 IPR014001 -
Arst5g00606 1072 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 549 747 IPR014001 -
Arst5g00606 1072 MobiDBLite consensus disorder prediction 1 203 - -
Arst5g00606 1072 MobiDBLite consensus disorder prediction 119 133 - -
Arst5g00606 1072 MobiDBLite consensus disorder prediction 1 28 - -
Arst5g00606 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 1025 IPR027417 -
Arst5g00606 1072 MobiDBLite consensus disorder prediction 51 79 - -
Arst5g00606 1072 MobiDBLite consensus disorder prediction 147 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00606 Arst-Chr5 4940819 4945215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00606 866 1045 RAD5 or RAD16-like Gene Family AT5G43530 36.612 2.45e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst5g00606 SNF2_N 5e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00606 K10875 - qsa:O6P43_024431 716.457