Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00586 ATGGAACTTAAGTACCACCAATTTGGCCTTGTTTGTGTCATAATGCTCTTACCTTTAATGTGTACTTCTCAAGACTCATTTACGTGCTCCAGAGCAACCTATTATGGCAGCCCTGAATGCACTGCCAACCCAACGGGAGCTTGTGGCTTTGGCGAATATGGAACGGCGATCAACGATGGCAGCGTGGCAGGCGTGTCTTGGCTATGGCGGAATGGATCTGGCTGTGGTGCATGCTATCAAGTTAGGTGCAAAATAGCAGAATACTGCGATGACTATGGAGCATATGTAGTGGTAACAGACTTCGGCGTGGGAGACAGAACCGACTTCATTATGAGTCCACGTGCTTATTCAAGATTGGCCAAGAACGAAGATGCATCTGCAGAGCTTTTCAAATACGGTGTGGTGGACGTAGAATACAAGAGGGTACCATGCAGATACGGTGGCTATAACATCATAGTCAAGGTGAATGAGCGCAGCTACAACCCACACTACTTAGCCATTGTAACTCTCTATGTTGGTGGAACACAAGACATAACTGCCGTTCAGTTCTGGCAGGAAGATTGCAAAGAATGGAGGCCAATGCGAAGGGCGTTTGGGACAGTGTTTGATGTTGAGAACCCACCAAGGGGTGACATAAAGTTAAGGTTCCAAGTGACTGGCAGTGCAGGGGTTTATTGGGTAGAGTCCAAGACCTTTATCACCAGTGATTGGAAGGCTGGAGCATCTTATGATACTCAAATCCAGCTTGAATAG 753 0.4701 MELKYHQFGLVCVIMLLPLMCTSQDSFTCSRATYYGSPECTANPTGACGFGEYGTAINDGSVAGVSWLWRNGSGCGACYQVRCKIAEYCDDYGAYVVVTDFGVGDRTDFIMSPRAYSRLAKNEDASAELFKYGVVDVEYKRVPCRYGGYNIIVKVNERSYNPHYLAIVTLYVGGTQDITAVQFWQEDCKEWRPMRRAFGTVFDVENPPRGDIKLRFQVTGSAGVYWVESKTFITSDWKAGASYDTQIQLE 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00586 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Arst5g00586 250 Pfam Expansin C-terminal domain 153 227 IPR007117 -
Arst5g00586 250 Gene3D - 18 144 IPR036908 -
Arst5g00586 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Arst5g00586 250 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Arst5g00586 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Arst5g00586 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Arst5g00586 250 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Arst5g00586 250 PANTHER EXPANSIN-B3 17 248 - -
Arst5g00586 250 Pfam Lytic transglycolase 62 139 IPR009009 -
Arst5g00586 250 Gene3D - 145 246 IPR036749 -
Arst5g00586 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
Arst5g00586 250 SUPERFAMILY Barwin-like endoglucanases 12 148 IPR036908 -
Arst5g00586 250 SUPERFAMILY PHL pollen allergen 150 244 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00586 Arst-Chr5 4854177 4855950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00586 10 249 Expansin Gene Family AT4G17030 62.241 1.86e-113 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00586 - - ccaj:109800044 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00586 5 4854177 4855950 Arst1g01792 1 33466483 33468849 PCT