Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00554 ATGTGCGAACAAAGCAGTTACGAGGCCGATTTGGCGCTACTGGACTCAATTCGTCGCCACTTGCTGGGAGAGTCCGACCCTTTTATATTCGGAGCACCGAATTGTAATTCGGGTAGCACACCGGTTTTCTGCAGGAGCTCCAGCTTCAGCAGCTTGTACCCTTGCCTGAGCGAAAATTGGGGCGAGTTGCCGCTCAAAGAAGACGATTCAGAAGATATGGTGCTCTACGGCGTTCTCCGCGACGCCGTAAACGTCGGTTGGGTCCCTTCTCTCGAAGCCGGATCACCCGAATCCTTCTCTTCGGGTTACTTACCCGACGTAACGGTTAAATCAGAGCCGGATGTATTTCATTCGGTGCCAAGCTTGCCGGAGCCTGTCATCTCCGCCGTCGTAGCCCCGATTGAAGAGAAGCCTACGCCTGTTCCGGTTCCGGCGAAGGGGAAGCACTACCGCGGAGTGAGGCAGCGACCTTGGGGGAAGTTCGCGGCGGAGATTCGTGACCCGGCGAAAAACGGTGCTAGGGTTTGGCTCGGAACATTCGAAACCGCCGAAGACGCTGCTTTAGCTTACGACCGCGCCGCGTACAGAATGCGCGGGTCGCGAGCTCTGTTGAATTTCCCACTCCGGGTAAACTCCGGTGAACCCGACCCCGTGAGGGTGACGTCTAAGCGGTCGTCGCCGGAGCCTTCATCATCGTCGGATAGTGTATCCACGACGAAGAGGAGGAAGAAGACGGTGGGACCGAGGGTACCGGTGGTGACAGGTCAGGTTGAGATGAAGACGGGGCAAGGGGAGTCAAGTGGCGCATTGTACACGTGGCGAGCAGTTATTGGTGAGCTGAGTAGTGCAACCACTCACTCGTCACTATTCACTAAAAATAATACAGTTGGGCCAAGATAA 900 0.56 MCEQSSYEADLALLDSIRRHLLGESDPFIFGAPNCNSGSTPVFCRSSSFSSLYPCLSENWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLEAGSPESFSSGYLPDVTVKSEPDVFHSVPSLPEPVISAVVAPIEEKPTPVPVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSPEPSSSSDSVSTTKRRKKTVGPRVPVVTGQVEMKTGQVXESSGALYTWRAVIGELSSATTHSSLFTKNNTVGPR 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00554 300 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Arst5g00554 300 MobiDBLite consensus disorder prediction 211 250 - -
Arst5g00554 300 CDD AP2 148 207 IPR001471 GO:0003700|GO:0006355
Arst5g00554 300 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Arst5g00554 300 PANTHER DNA-BINDING DOMAIN 137 240 IPR044808 GO:0003700|GO:0009873
Arst5g00554 300 Gene3D AP2/ERF domain 148 210 IPR036955 GO:0003700|GO:0006355
Arst5g00554 300 FunFam Ethylene-responsive transcription factor 2 148 208 - -
Arst5g00554 300 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Arst5g00554 300 PRINTS Ethylene responsive element binding protein signature 173 189 IPR001471 GO:0003700|GO:0006355
Arst5g00554 300 SUPERFAMILY DNA-binding domain 149 209 IPR016177 GO:0003677
Arst5g00554 300 Pfam AP2 domain 149 199 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00554 Arst-Chr5 4644839 4646082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00554 1 220 AP2-EREBP Transcription Factor Family AT4G17500 58.009 8.14e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst5g00554 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00554 K09286 - gmx:100819649 344.739