Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00548 ATGACCATGGAAAACCAAGATTTGGGGCTCACCCTAAGTTTGAGCTTCCCTCAACAACAACTCAATCTCATCCCTTCTCCCTACAAAACCCCTTCTTGGAACAACCAACCCTTCAATTCTTCAGATAATCGAGATTCGGAGACATGCAGGGGCAGTGCTGAAGGTGGATCGTTCCTCCTCCGGGGGATCGACGTGAACAGCTTGCCGTCCGGCGTGGACTGCGAAGACGACGCCGGAGTGTCGTCGCCGAACAGCACAGTTTCGAGTGTGAGCGGCAAGAGGAGCAGCGAGAGAGAACAAAATAATGGCGAAGATCACGACACGGAGAGAGCTTCTTCCAGAGGCATCTCCGACGAAGAAGACGGTGAAACCTCCCGCAAGAAGCTCAGGCTCTCTAAGGACCAATCCGCTGTCCTGGAAGAGAGTTTCAAAGAACACAACACTCTCAACCCCAAGCAAAAGTTAGCACTAGCAAAGCAGCTTGGCCTTCGCGCAAGACAAGTTGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACGAAGCTGAAGCAAACAGAGGTTGACTGTGAGTTTCTAAAGAGATGCTGTGAGAATCTAACGGAGGAGAATAGGAGACTACAGAAGGAGGTTCAAGAACTGAGAGCACTCAAGCTTTCCCCTCAGTTCTACATGCAGATGAGTCCGCCAACTACCCTCACCATGTGCCCTTCGTGTGAGCGCGTCGCTGTTCCTCCCTCAGCCGTCGATCCCGCCACGCGTCATCATCAGATGCCACAACCCCATCACCACACTCGGCCCATTCCAATTGGGCCCTGGGCCGCTGCTCCTCCTGTCTTCCGTCCCAGGTCGTGA 849 0.5336 MTMENQDLGLTLSLSFPQQQLNLIPSPYKTPSWNNQPFNSSDNRDSETCRGSAEGGSFLLRGIDVNSLPSGVDCEDDAGVSSPNSTVSSVSGKRSSEREQNNGEDHDTERASSRGISDEEDGETSRKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMSPPTTLTMCPSCERVAVPPSAVDPATRHHQMPQPHHHTRPIPIGPWAAAPPVFRPRS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00548 282 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Arst5g00548 282 MobiDBLite consensus disorder prediction 97 133 - -
Arst5g00548 282 CDD homeodomain 126 183 IPR001356 GO:0003677
Arst5g00548 282 SUPERFAMILY Homeodomain-like 113 183 IPR009057 -
Arst5g00548 282 SMART HOX_1 124 186 IPR001356 GO:0003677
Arst5g00548 282 Gene3D - 130 180 - -
Arst5g00548 282 MobiDBLite consensus disorder prediction 70 133 - -
Arst5g00548 282 Pfam HD-ZIP protein N terminus 3 96 IPR006712 GO:0005634
Arst5g00548 282 MobiDBLite consensus disorder prediction 79 96 - -
Arst5g00548 282 MobiDBLite consensus disorder prediction 247 282 - -
Arst5g00548 282 MobiDBLite consensus disorder prediction 23 54 - -
Arst5g00548 282 FunFam Homeobox-leucine zipper protein 18 109 187 - -
Arst5g00548 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 61 255 - -
Arst5g00548 282 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
Arst5g00548 282 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Arst5g00548 282 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Arst5g00548 282 MobiDBLite consensus disorder prediction 23 46 - -
Arst5g00548 282 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Arst5g00548 282 PRINTS Lambda-repressor HTH signature 153 162 IPR000047 GO:0003677
Arst5g00548 282 PRINTS Lambda-repressor HTH signature 162 178 IPR000047 GO:0003677
Arst5g00548 282 Coils Coil 181 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00548 Arst-Chr5 4580794 4582538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00548 1 273 Homeobox Transcription Factor Family AT5G47370 60.900 5.94e-107 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst5g00548 HD-ZIP_N 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00548 K09338 - gmx:547858 376.711