Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst5g00542 | ATGACGCGACGGTGCTCGCATTGCAGCAACAACGGCCACAATTCGAGGACGTGCCCCAACAGAGGGGTTAAGCTCTTCGGGGTCCGATTGACGGACGGGTCGATCCGAAAGAGCGCTAGCATGGGAAATCTCACCCACTATGCTGCGTCGGGTTCTAGTTCCGGGTCCCACCACCATGCATCCAACAATCCGGGTTCTCCCGGCGGTGGTGACACCCCCGATCACGCCGCCGCCGAGGGTTATGCCTCCGAAGACTTTGTTCCTGGGTCGTCTTCTACCTCGCGTGAACGAAAAAGGGGTGTCCCGTGGACTGAGGAGGAACACAGAATGTTTTTACTTGGATTACAGAAGCTTGGAAAAGGTGATTGGCGTGGAATTGCACGAAATTATGTCACATCAAGGACACCTACTCAAGTGGCCAGTCATGCTCAAAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGCAAAAGACGTTCCAGTCTATTTGATATTGTCGCAGATGAATCAGCGGACACACCAATGGTGCAGCAAGATCAGCTACAGATCGAAACAGAAGGCAATAACCCCTTGCCTCCTGTGCCTCCAGCCCTCGATGAAGAGTGTGAATCCATGGATTCTGCTAACTCAAATGACAGGGAATTGGCCTTGTTGAAGTCAGATAACTCGCGATCACCATTCCCAGTGCTGTATCCTACCTTTTATCCTCCTGTCTTCCAATTACCTATTCCCTGTTGGTCAGGATATGATCCAGAGCCTACTAAGAAGAAGGAAGCTCATGAAGTGTTGAAGCCAACTGCAGTGCATTCTAAAAGCCCAATTAATGTTGATGAACTGGTTGGCATGTCAAAACTGAGTTTAGGAGACTCCATTGGGGACTCTGCCCCATCCTCCCTGTCCCTAAAACTCCTCGAAGGACCTTCTAGACAATCAGCTTTTCATGCAACTCCAGCGTGCGATAGTTCGAACATGAACGGCAGCGCAATCCACGCATTATAA | 999 | 0.5015 | MTRRCSHCSNNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAASGSSSGSHHHASNNPGSPGGGDTPDHAAAEGYASEDFVPGSSSTSRERKRGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVTSRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADESADTPMVQQDQLQIETEGNNPLPPVPPALDEECESMDSANSNDRELALLKSDNSRSPFPVLYPTFYPPVFQLPIPCWSGYDPEPTKKKEAHEVLKPTAVHSKSPINVDELVGMSKLSLGDSIGDSAPSSLSLKLLEGPSRQSAFHATPACDSSNMNGSAIHAL | 332 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst5g00542 | 332 | Gene3D | - | 101 | 153 | - | - | |
| Arst5g00542 | 332 | MobiDBLite | consensus disorder prediction | 46 | 68 | - | - | |
| Arst5g00542 | 332 | PANTHER | TRANSCRIPTION FACTOR KUA1 | 3 | 270 | - | - | |
| Arst5g00542 | 332 | ProSiteProfiles | SANT domain profile. | 98 | 151 | IPR017884 | - | |
| Arst5g00542 | 332 | SMART | sant | 99 | 149 | IPR001005 | - | |
| Arst5g00542 | 332 | MobiDBLite | consensus disorder prediction | 46 | 77 | - | - | |
| Arst5g00542 | 332 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 98 | 150 | IPR006447 | GO:0003677 | |
| Arst5g00542 | 332 | CDD | SANT | 102 | 147 | IPR001005 | - | |
| Arst5g00542 | 332 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 95 | 151 | IPR017930 | - | |
| Arst5g00542 | 332 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Arst5g00542 | 332 | FunFam | transcription factor MYB1R1 | 101 | 152 | - | - | |
| Arst5g00542 | 332 | ProSiteProfiles | Myb-like domain profile. | 95 | 147 | IPR001005 | - | |
| Arst5g00542 | 332 | Pfam | Myb-like DNA-binding domain | 102 | 147 | IPR001005 | - | |
| Arst5g00542 | 332 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Arst5g00542 | 332 | SUPERFAMILY | Homeodomain-like | 97 | 152 | IPR009057 | - | |
| Arst5g00542 | 332 | MobiDBLite | consensus disorder prediction | 84 | 103 | - | - | |
| Arst5g00542 | 332 | ProSiteProfiles | Zinc finger CCHC-type profile. | 3 | 20 | IPR001878 | GO:0003676|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst5g00542 | Arst-Chr5 | 4535911 | 4538421 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Arst5g00542 | Myb_DNA-binding | 5.5e-11 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst5g00542 | - | - | ccaj:109807943 | 534.258 |