Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00540 ATGGACGTGGACCCACAAAAACCCCTTGTCTCTCCCATCATTGTCAACTCCGCCGCTTCCTCATCTTCCCCCGATCAATCTTCACCTCCACCACCCAAACCACGCGCCAAAAAGAGGGCCGCTGCTAGTGGATACCGCGGAGTACGCATGCGCCAATGGGGCAAATGGGTCTCTGAAATTAGAGAGCCCAAGAAGAGGAACAGAATCTGGCTCGGAACTTACGCCACTGCTGAAATGGCGGCTCGAGCCCACGACGCCGCGGCTCTAGCAATCAAAGGCCGCGCTGTACAAGCCGCCGCTGCCAAGGCAGCCGCATTGGATTACTTTCCAAGCCATGAAGCCGTAGCCAATCCCAGCCGAATCGTGTCCGCGTCGTCCTCATCATCCTCCTCATCCTCTTCCTCCCACCCTAAGGACAAGGAAGAATCACCGAATTCATCGATGGACAAGGATGATGACATGTTTGTGGACCTCCCTGACCTGATAATTGACTTGGATCACGGTGGTCGAGGAAGTGAATTTGATTACTCGACGCGTTGGCTTGTAAACGAAGCCGACCAACTCGACTCGGCTTTCCAGCTCGCAGAGCCTTTCCAGTGGGAGTCAGTTCCCTACTAA 618 0.5485 MDVDPQKPLVSPIIVNSAASSSSPDQSSPPPPKPRAKKRAAASGYRGVRMRQWGKWVSEIREPKKRNRIWLGTYATAEMAARAHDAAALAIKGRAAILNFPELGPHLPRPPTNSPKDIQAAAAKAAALDYFPSHEAVANPSRIVSASSSSSSSSSSSHPKDKEESPNSSMDKDDDMFVDLPDLIIDLDHGGRGSEFDYSTRWLVNEADQLDSAFQLAEPFQWESVPY 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00540 227 MobiDBLite consensus disorder prediction 141 174 - -
Arst5g00540 227 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Arst5g00540 227 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
Arst5g00540 227 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Arst5g00540 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 186 - -
Arst5g00540 227 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Arst5g00540 227 CDD AP2 43 103 IPR001471 GO:0003700|GO:0006355
Arst5g00540 227 MobiDBLite consensus disorder prediction 157 174 - -
Arst5g00540 227 MobiDBLite consensus disorder prediction 1 45 - -
Arst5g00540 227 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Arst5g00540 227 MobiDBLite consensus disorder prediction 141 156 - -
Arst5g00540 227 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Arst5g00540 227 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Arst5g00540 227 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00540 Arst-Chr5 4522344 4523418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00540 45 220 AP2-EREBP Transcription Factor Family AT2G44940 48.544 1.54e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst5g00540 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00540 - - ahf:112747744 367.466