Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00539 ATGCCCACAATGGAAGGGAATGGATCAACTAAGAAAACATATAATAGAGGGGCGTGGACACCGGAGGAAGATCAAAAGCTAGCTCAATGCATAGAGGTTCATGGACCCAAGAGGTGGAAGACCGTTGCAACCAAATCAGGTCTAAACAGATGTGGAAAGAGTTGCCGCTTGAGATGGTTGAACTACCTTAGACCTAATATCAAGAGAGGCAACATTTCAGATGAAGAAGAGGATTTGATCATAAGGCTTCACAAGTTGCTAGGAAACAGGTGGTCGTTGATAGCAAAGAGGCTTCCAGGACGAACAGACAATGAAATCAAGAACTACTGGAATTCATGTTTGTGTAAGAAGGTTAATCCCAAAGATCTAAAACCCCACACTAGTTCAACTACGCCACAAGAAACTCGTGCTGATGAGGGAATATCATCAGCACTAGAAAGTGGAGGAAGTGGGCACATGGAAATGAAGTTTGATTTCAATGAATTTTTCGACTTTTCAATTGACGAAGGAGCATATGCATTGGATTGGGTGAACAAGTTTCTGGAGCTTGATGTAATCCCAGAGAGTTCAACCGAGTAA 579 0.4249 MPTMEGNGSTKKTYNRGAWTPEEDQKLAQCIEVHGPKRWKTVATKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLIIRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNSCLCKKVNPKDLKPHTSSTTPQETRADEGISSALESGGSGHMEMKFDFNEFFDFSIDEGAYALDWVNKFLELDVIPESSTE 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00539 192 CDD SANT 73 111 IPR001005 -
Arst5g00539 192 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 10 135 - -
Arst5g00539 192 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
Arst5g00539 192 MobiDBLite consensus disorder prediction 123 147 - -
Arst5g00539 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Arst5g00539 192 FunFam Transcription factor TT2 72 142 - -
Arst5g00539 192 FunFam MYB-related transcription factor 15 68 - -
Arst5g00539 192 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Arst5g00539 192 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Arst5g00539 192 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Arst5g00539 192 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Arst5g00539 192 CDD SANT 18 63 IPR001005 -
Arst5g00539 192 Gene3D - 16 68 - -
Arst5g00539 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Arst5g00539 192 MobiDBLite consensus disorder prediction 124 140 - -
Arst5g00539 192 Gene3D - 72 142 - -
Arst5g00539 192 SMART sant 15 65 IPR001005 -
Arst5g00539 192 SMART sant 68 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00539 Arst-Chr5 4507652 4508589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00539 14 169 MYB Transcription Factor Family AT5G40330 50.633 2.47e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst5g00539 Myb_DNA-binding 5.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00539 K09422 - gmx:100816449 265.774