Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00532 ATGGCTGAAGAGAGGTACAGCGGCGTCGTTCAGTGGTTCAGCAACTCCAAGGGTTTCGGCTTCATCAAGCCCGACCAAGGCGGTGACGACCTCTTCGTCCACCACTCCTCCATCCAATCCGATGGCGCTTTCCGAACCCTAGTTGATGGCGATCGCGTCGAGTTCTCCATTGCTGACAACAGCGACAAGCCCAAGGCTCTTGACGTCACTGGCCCCAATGGCGCGCCTCTGCGCTCCGCTCACGACTCTGCTCGCGCCGGTAACGATAACAGACGCAGCGCTGGTGCTGGAGGAGGAGGAGGCGGCGGAGCCTGTTACCAGTGTGGTGATTTCGGTCATCTTGCTAGGGATTGCAGCCGTGCTGGCAATGGCGGTGGTGGCGGCGGCGGCGGTGCATGCTACAGTTGCGGCGGATTCGGACACATGGCTAGGGATTGCGTCAGTGGAGGCGGCGGAGGAGGAGCAAACGGTGGGGGCTGCTTTAAATGCGGCGAGTTCGGGCACATGGCGAGGGATTGCAGTGGAGGTGGCGGTGGCGGTAACGGTGGTGGTTGCTATAGGTGTGGTGAGGTTGGTCACTTGGCTAGGGATTGCAACAGAGAAGGTGGTTCCGGTGCTGGTGGAAACGGTGGAAAGAGCACGTGCTTCAATTGTGGGAAACCTGGGCATTTTGCTAGGGAGTGCGTTGAGGCCTCTGGTTAA 702 0.5983 MAEERYSGVVQWFSNSKGFGFIKPDQGGDDLFVHHSSIQSDGAFRTLVDGDRVEFSIADNSDKPKALDVTGPNGAPLRSAHDSARAGNDNRRSAGAGGGGGGGACYQCGDFGHLARDCSRAGNGGGGGGGGACYSCGGFGHMARDCVSGGGGGGANGGGCFKCGEFGHMARDCSGGGGGGNGGGCYRCGEVGHLARDCNREGGSGAGGNGGKSTCFNCGKPGHFARECVEASG 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00532 233 Gene3D - 99 152 - -
Arst5g00532 233 SUPERFAMILY Retrovirus zinc finger-like domains 150 201 IPR036875 GO:0003676|GO:0008270
Arst5g00532 233 ProSiteProfiles Zinc finger CCHC-type profile. 185 198 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 ProSiteProfiles Zinc finger CCHC-type profile. 105 118 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Arst5g00532 233 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Arst5g00532 233 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Arst5g00532 233 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Arst5g00532 233 Gene3D - 207 233 - -
Arst5g00532 233 Gene3D - 155 181 - -
Arst5g00532 233 Gene3D - 182 206 - -
Arst5g00532 233 PANTHER COLD SHOCK DOMAIN PROTEIN 2 175 230 - -
Arst5g00532 233 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Arst5g00532 233 SUPERFAMILY Retrovirus zinc finger-like domains 95 148 IPR036875 GO:0003676|GO:0008270
Arst5g00532 233 Pfam Zinc knuckle 104 119 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 Pfam Zinc knuckle 132 146 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 Pfam Zinc knuckle 214 228 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 Pfam Zinc knuckle 184 198 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 Pfam Zinc knuckle 159 174 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 ProSiteProfiles Zinc finger CCHC-type profile. 215 228 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 SUPERFAMILY Retrovirus zinc finger-like domains 202 229 IPR036875 GO:0003676|GO:0008270
Arst5g00532 233 ProSiteProfiles Zinc finger CCHC-type profile. 160 173 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 MobiDBLite consensus disorder prediction 62 100 - -
Arst5g00532 233 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Arst5g00532 233 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Arst5g00532 233 SMART c2hcfinal6 184 200 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 SMART c2hcfinal6 214 230 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 SMART c2hcfinal6 132 148 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 SMART c2hcfinal6 159 175 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 SMART c2hcfinal6 104 120 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Arst5g00532 233 Gene3D - 6 85 IPR012340 -
Arst5g00532 233 ProSiteProfiles Zinc finger CCHC-type profile. 133 146 IPR001878 GO:0003676|GO:0008270
Arst5g00532 233 SMART csp_8 7 72 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00532 Arst-Chr5 4422261 4423470 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Arst5g00532 CSD 1.3e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00532 K09250 - gmx:106796585 289.271