Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00506 ATGTCTTTTAACAAAAATGTTGGAAACAAATCTGGGATGGTGGAATTTGTAGGCCCTAATGGGGAGGTTTTCATGTGTAGAAGTGATGTGGAGATTGGTTTGTCTCACCAAGATGCATTGATTGAACTTGGTTGCTGTTGTAAGAATGACCTTGCTTTAGTACACTATGCTTGTGCACTCAAGTGGTTTATTAATCATGGATCAACAATTTGTGAAATATGTGGACACATAGGCAATAATATCAGAATCTCTGACTTCAACAAGGTTGTTGGTTCTCTGAAAGAATATGAAGCCTTGAGGGAGAGAACTGTCAGTAGGGATCCTGGTCCTCATGTTCATGCAAATAATAATACTGGCATTGATCCTGACGCTGTGGCTGCTATCCGGAGGCAAAGGCTAAGTGAGATTGCATTATGGTTTTGTCCTCATAATACCAGTAGTATAAACAACAATAGCAATGCCGACACAGTTTCACAGGTTGCTTCTGAGCAGCCTTCAAATTTTGTTACTGAAGATGCTGGCCCTGCACAGAGTCCTGCAACCAAGTGGGCCGTGGAAGGCGCAGGGATCCTGCTTGCTACTGGCCTGCTTACAATCACCCTTGCGTGGCTGATAGCTCCTCGAGTTGGAAAGAAAACAGCCAAAAGTGGTCTTCACATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTTGTTTTTTTTTCTGCTTTTTTGTGCTTATTAGAATCAAGTACGGACCTGCACGTTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTGTTTGCAATATGGGCTTCACGGACCTTAG 810 0.4284 MSFNKNVGNKSGMVEFVGPNGEVFMCRSDVEIGLSHQDALIELGCCCKNDLALVHYACALKWFINHGSTICEICGHIGNNIRISDFNKVVGSLKEYEALRERTVSRDPGPHVHANNNTGIDPDAVAAIRRQRLSEIALWFCPHNTSSINNNSNADTVSQVASEQPSNFVTEDAGPAQSPATKWAVEGAGILLATGLLTITLAWLIAPRVGKKTAKSGLHILLGGVCALTVVVFFSAFLCLLESSTDLHVIGQSCSFSGFLCLQYGLHGP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00506 269 Pfam RING-variant domain 40 74 IPR011016 GO:0008270
Arst5g00506 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 77 IPR013083 -
Arst5g00506 269 ProSiteProfiles Zinc finger RING-CH-type profile. 15 81 IPR011016 GO:0008270
Arst5g00506 269 PANTHER ZINC FINGER, RING-CH-TYPE 15 221 - -
Arst5g00506 269 SUPERFAMILY RING/U-box 37 76 - -
Arst5g00506 269 SMART ringv_2 26 75 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00506 Arst-Chr5 4230550 4234887 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00506 6 234 C3H Transcription Factor Family AT5G08750 67.647 3.50e-103 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00506 - - adu:107487456 479.559