Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00499 ATGAATAATCTCAACAACTTGATTTCAATTGTGTTCAATTTAATTGGTCTAACAAAGGGACCAAGCAATGTCTCTTTATGTTATTTGCTATCATCTGACTCTGCAGCAGCATCTTCATCAAATGAACTCATCATGGAGAATAATGGTGAGGCTGTTTGGTGCTGTGTATGCTTGTCGAGGTTAAAGGACGAAGACGAAATTCGAGTCCTTCCTTGCCTGCACAAGTTCCACAAGGTTTGTGTGAATAGATGGCTCAAAGGTCGCCACAAAACCTGCCCCCTCTGCCGGTTTTCGATGGGAGGTGGCGGCGAGGAGAAGTCGCACCACCGGCCCGAAATGTTCACTGAAGAGATGTTGATATGGTTTTCTTCTTTCCATATAGCTGGTATGTAG 393 0.4427 MNNLNNLISIVFNLIGLTKGPSNVSLCYLLSSDSAAASSSNELIMENNGEAVWCCVCLSRLKDEDEIRVLPCLHKFHKVCVNRWLKGRHKTCPLCRFSMGGGGEEKSHHRPEMFTEEMLIWFSSFHIAGM 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00499 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 101 IPR013083 -
Arst5g00499 130 SMART ring_2 54 95 IPR001841 -
Arst5g00499 130 CDD RING-H2_PA-TM-RING 54 96 - -
Arst5g00499 130 PANTHER TARGET OF ERK KINASE MPK-1 40 101 - -
Arst5g00499 130 SUPERFAMILY RING/U-box 48 99 - -
Arst5g00499 130 Pfam Ring finger domain 54 96 IPR001841 -
Arst5g00499 130 ProSiteProfiles Zinc finger RING-type profile. 54 96 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00499 Arst-Chr5 4177820 4178212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00499 48 100 C3H Transcription Factor Family AT1G80400 49.057 1.23e-13 64.3